Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   S9968_RS10520 Genome accession   NZ_CP058666
Coordinates   2047484..2047924 (-) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain S9968     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2042484..2052924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S9968_RS10505 (S9968_102104) - 2043142..2043768 (-) 627 WP_000449644.1 GTP pyrophosphokinase family protein -
  S9968_RS10510 (S9968_102105) rcrQ 2043876..2045630 (-) 1755 WP_000851087.1 ABC transporter ATP-binding protein Regulator
  S9968_RS10515 (S9968_102106) rcrP 2045620..2047437 (-) 1818 WP_000481813.1 ABC transporter ATP-binding protein Regulator
  S9968_RS10520 (S9968_102107) rcrR 2047484..2047924 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  S9968_RS10525 (S9968_102108) - 2048193..2050265 (+) 2073 WP_000726930.1 bifunctional metallophosphatase/5'-nucleotidase -
  S9968_RS10530 (S9968_102109) - 2050302..2050712 (-) 411 WP_000594935.1 peptide deformylase -
  S9968_RS10535 (S9968_102110) gdhA 2050782..2052131 (-) 1350 WP_000200435.1 NADP-specific glutamate dehydrogenase -
  S9968_RS10540 (S9968_102111) - 2052299..2052808 (+) 510 WP_000870956.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=406402 S9968_RS10520 WP_000431168.1 2047484..2047924(-) (rcrR) [Streptococcus agalactiae strain S9968]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=406402 S9968_RS10520 WP_000431168.1 2047484..2047924(-) (rcrR) [Streptococcus agalactiae strain S9968]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATTTCTAAGTCTGTAGCGTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411

Multiple sequence alignment