Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   GPA07_RS01110 Genome accession   NZ_CP046653
Coordinates   196742..197854 (-) Length   370 a.a.
NCBI ID   WP_157291883.1    Uniprot ID   -
Organism   Bacillus sp. ms-22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 191742..202854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS01095 (GPA07_01095) gyrA 191756..194272 (-) 2517 WP_157291882.1 DNA gyrase subunit A -
  GPA07_RS01100 (GPA07_01100) gyrB 194505..196421 (-) 1917 WP_008360922.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  GPA07_RS01105 (GPA07_01105) - 196479..196724 (-) 246 WP_008360920.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  GPA07_RS01110 (GPA07_01110) recF 196742..197854 (-) 1113 WP_157291883.1 DNA replication/repair protein RecF Machinery gene
  GPA07_RS01115 (GPA07_01115) yaaA 197871..198086 (-) 216 WP_008360916.1 S4 domain-containing protein YaaA -
  GPA07_RS01120 (GPA07_01120) dnaN 198237..199373 (-) 1137 WP_008360914.1 DNA polymerase III subunit beta -
  GPA07_RS01125 (GPA07_01125) dnaA 199570..200910 (-) 1341 WP_008360911.1 chromosomal replication initiator protein DnaA -
  GPA07_RS01130 (GPA07_01130) rpmH 201531..201665 (+) 135 WP_008360908.1 50S ribosomal protein L34 -
  GPA07_RS01135 (GPA07_01135) rnpA 201744..202103 (+) 360 WP_008360906.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42574.65 Da        Isoelectric Point: 7.3664

>NTDB_id=406402 GPA07_RS01110 WP_157291883.1 196742..197854(-) (recF) [Bacillus sp. ms-22]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFRKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=406402 GPA07_RS01110 WP_157291883.1 196742..197854(-) (recF) [Bacillus sp. ms-22]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCAATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAACGGTCCA
CTCCCCATGCAGCTTGTGATCTCAAAAAAAGGAAAAAAGGGAAAAGTCAATCATATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCTTTAAACACCATCATGTTTGCACCAGAGGATCTCAGTCTTGTGAAAGGCAGCCCGCAAATCCGCAGAAGGT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTACATGATTTATCGCTCTATCAAAAAATCCTCTCTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACAGATCAAGCGATGCTGGAGGTTTTAACAGAGCAATTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTTACTTTTACGAAACAACTTGAAAAATGGGCGCAGCCGTTGCATTTTGGGA
TTTCTAGAGAACTAGAAACACTCACGCTCCAATACCAGACGGCGATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCGAAAATTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTGTGGGGACCTCACAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGTGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATCCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATTGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.74

99.73

0.835

Multiple sequence alignment