Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GPA07_RS00815 Genome accession   NZ_CP046653
Coordinates   140856..141146 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus sp. ms-22     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 135856..146146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS00800 (GPA07_00800) - 136041..137324 (-) 1284 Protein_138 ubiquitin-like domain-containing protein -
  GPA07_RS00805 (GPA07_00805) - 137488..138255 (-) 768 WP_008357458.1 TatD family hydrolase -
  GPA07_RS00810 (GPA07_00810) metG 138337..140337 (-) 2001 WP_157291872.1 methionine--tRNA ligase -
  GPA07_RS00815 (GPA07_00815) abrB 140856..141146 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GPA07_RS00820 (GPA07_00820) rsmI 141191..142072 (-) 882 WP_071168252.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GPA07_RS00825 (GPA07_00825) - 142047..142346 (-) 300 WP_008357464.1 GIY-YIG nuclease family protein -
  GPA07_RS00830 (GPA07_00830) - 142333..143076 (-) 744 WP_071168253.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  GPA07_RS00835 (GPA07_00835) yabA 143132..143485 (-) 354 WP_008357468.1 DNA replication initiation control protein YabA -
  GPA07_RS00840 (GPA07_00840) - 143500..144327 (-) 828 WP_007496230.1 stage 0 sporulation family protein -
  GPA07_RS00845 (GPA07_00845) holB 144330..145319 (-) 990 WP_008357472.1 DNA polymerase III subunit delta' -
  GPA07_RS00850 (GPA07_00850) - 145331..145771 (-) 441 WP_008357474.1 YaaR family protein -
  GPA07_RS00855 (GPA07_00855) - 145784..146113 (-) 330 WP_071169204.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=406400 GPA07_RS00815 WP_087975202.1 140856..141146(+) (abrB) [Bacillus sp. ms-22]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=406400 GPA07_RS00815 WP_087975202.1 140856..141146(+) (abrB) [Bacillus sp. ms-22]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GTTAGGAATTGCTGAAAAAGACGCTTTGGAAATCTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAGCCAAATA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAATCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment