Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GPU01_RS16855 Genome accession   NZ_CP046645
Coordinates   3443129..3443725 (-) Length   198 a.a.
NCBI ID   WP_004893148.1    Uniprot ID   A0A483M0T8
Organism   Klebsiella pneumoniae strain EGKP3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3438129..3448725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPU01_RS16840 (GPU01_16570) helD 3438337..3440391 (-) 2055 WP_004179218.1 DNA helicase IV -
  GPU01_RS16845 (GPU01_16575) - 3440516..3440962 (+) 447 WP_002898425.1 YccF domain-containing protein -
  GPU01_RS16850 (GPU01_16580) yccS 3440980..3443115 (+) 2136 WP_002898422.1 YccS family putative transporter -
  GPU01_RS16855 (GPU01_16585) sxy/tfoX 3443129..3443725 (-) 597 WP_004893148.1 TfoX/Sxy family DNA transformation protein Regulator
  GPU01_RS16860 (GPU01_16590) sulA 3444074..3444583 (+) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  GPU01_RS16865 (GPU01_16595) ompA 3444936..3446006 (+) 1071 WP_002898408.1 porin OmpA -
  GPU01_RS16870 (GPU01_16600) matP 3446138..3446590 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  GPU01_RS16875 (GPU01_16605) - 3446776..3448533 (+) 1758 WP_004147851.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22562.12 Da        Isoelectric Point: 10.1298

>NTDB_id=406388 GPU01_RS16855 WP_004893148.1 3443129..3443725(-) (sxy/tfoX) [Klebsiella pneumoniae strain EGKP3]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIGGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=406388 GPU01_RS16855 WP_004893148.1 3443129..3443725(-) (sxy/tfoX) [Klebsiella pneumoniae strain EGKP3]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCAGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGGCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A483M0T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment