Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GM661_RS15860 Genome accession   NZ_CP046640
Coordinates   3304058..3305416 (-) Length   452 a.a.
NCBI ID   WP_230867690.1    Uniprot ID   -
Organism   Iocasia fonsfrigidae strain NS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3299058..3310416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM661_RS15830 (GM661_15845) - 3299231..3300019 (-) 789 WP_205739294.1 HutP family protein -
  GM661_RS15835 (GM661_15850) ispF 3300023..3300505 (-) 483 WP_125991762.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GM661_RS15840 (GM661_15855) ispD 3300507..3301196 (-) 690 WP_230867688.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GM661_RS15845 (GM661_15860) - 3301201..3302310 (-) 1110 WP_230867689.1 PIN/TRAM domain-containing protein -
  GM661_RS15850 (GM661_15865) - 3302382..3302885 (-) 504 WP_125991768.1 CarD family transcriptional regulator -
  GM661_RS15855 (GM661_15870) disA 3302978..3304054 (-) 1077 WP_125991770.1 DNA integrity scanning diadenylate cyclase DisA -
  GM661_RS15860 (GM661_15875) radA 3304058..3305416 (-) 1359 WP_230867690.1 DNA repair protein RadA Machinery gene
  GM661_RS15865 (GM661_15880) - 3305499..3307919 (-) 2421 WP_230867691.1 ATP-dependent Clp protease ATP-binding subunit -
  GM661_RS15870 (GM661_15885) - 3307932..3308981 (-) 1050 WP_125992402.1 protein arginine kinase -
  GM661_RS15875 (GM661_15890) - 3308984..3309496 (-) 513 WP_230867692.1 UvrB/UvrC motif-containing protein -
  GM661_RS15880 (GM661_15895) - 3309498..3309971 (-) 474 WP_125991778.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49159.47 Da        Isoelectric Point: 8.1159

>NTDB_id=406355 GM661_RS15860 WP_230867690.1 3304058..3305416(-) (radA) [Iocasia fonsfrigidae strain NS-1]
MARDRVDYTCEECGYKSSKWMGRCPNCDTWNSFVERRANKGSGKQVQLRVEPSPITKIEAGVRARSSSGIGELDRVLGGG
IVSGSLVLLGGAPGIGKSTLILQAASLFSKTNGQVLYVSGEESATQIKLRAERLKAINNSLYILAETEFDQISVALHKGN
YDLVIIDSIQTVYEPKLDSAPGSIPQVKEITNQLMKIAKTKNIPIFLIGHVTKEGNLAGPRVMEHLVDAVLQFEGDRNYS
YRILRAVKNRYGSTNEVGVFEMKGSGMEEVLNPSQLFLEERPDGVSGSVIAPVIEGSRPLLIEVQSLVSSSTFSAPQRLT
TGVDYKRVSILLAVLEKKAGFNFQTKDVHINITGGFKVDEPALDLGIISAIISSYQDQVIPDGLAVIGEVGLAGEVRAVS
QIEQRIKEAKKLGFNRIIIPQGNFKGLNFDPEVNIVGIVNIHQLLQHISKVG

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=406355 GM661_RS15860 WP_230867690.1 3304058..3305416(-) (radA) [Iocasia fonsfrigidae strain NS-1]
ATGGCGAGAGACAGGGTTGATTATACGTGTGAGGAATGCGGCTATAAGAGCTCCAAATGGATGGGACGTTGTCCGAATTG
TGATACCTGGAATTCGTTTGTTGAAAGGAGAGCTAATAAGGGCAGTGGGAAACAGGTTCAGCTTAGGGTTGAACCCAGTC
CAATTACAAAAATTGAAGCTGGAGTGCGTGCTCGTTCTTCCTCCGGGATTGGTGAATTAGACCGTGTCCTGGGGGGCGGG
ATTGTAAGTGGGTCTCTGGTTTTACTTGGAGGAGCCCCTGGTATTGGGAAATCAACCCTGATATTACAGGCGGCTTCCCT
TTTTAGTAAAACTAATGGCCAGGTTTTATATGTTTCAGGTGAGGAATCAGCTACCCAGATAAAACTGAGGGCGGAGAGAT
TAAAGGCCATTAATAATAGTTTATATATTCTGGCTGAAACCGAGTTTGACCAGATAAGTGTAGCCCTACATAAAGGTAAT
TATGACCTGGTAATAATTGATTCTATTCAGACGGTCTATGAACCAAAACTGGATAGTGCCCCTGGTAGTATTCCTCAGGT
TAAAGAGATTACTAATCAGCTTATGAAAATAGCCAAGACTAAAAATATACCAATCTTTTTAATTGGGCATGTTACTAAAG
AGGGCAACCTGGCAGGGCCGAGAGTTATGGAACATCTGGTTGATGCAGTACTCCAGTTTGAAGGTGACCGCAACTACTCT
TATCGTATCTTACGAGCGGTTAAGAATAGGTATGGTTCAACTAATGAGGTTGGGGTTTTTGAAATGAAGGGTTCCGGTAT
GGAAGAAGTACTAAATCCTTCCCAATTATTCTTGGAGGAGAGACCTGACGGGGTATCTGGTTCTGTAATAGCACCTGTTA
TTGAAGGAAGCAGACCATTATTGATCGAGGTGCAGTCTCTGGTATCTTCTTCAACTTTTTCTGCGCCACAGCGTTTAACT
ACTGGTGTTGATTATAAAAGGGTATCTATTTTACTGGCTGTTCTGGAGAAAAAAGCCGGTTTCAACTTTCAGACTAAAGA
TGTCCATATTAATATTACAGGCGGGTTCAAGGTAGATGAGCCGGCTCTGGATTTAGGGATTATATCAGCTATCATTTCTA
GTTATCAGGATCAGGTTATACCAGATGGACTGGCTGTTATAGGTGAGGTTGGATTAGCAGGTGAGGTCAGAGCAGTCAGC
CAGATAGAACAGCGTATTAAAGAAGCAAAAAAACTGGGATTTAATAGGATTATTATTCCACAGGGTAATTTTAAAGGGCT
TAATTTTGACCCTGAAGTAAACATTGTGGGAATAGTAAATATACATCAATTATTACAACATATCTCTAAGGTGGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(337-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.539

100

0.527
  radA Streptococcus pneumoniae Rx1

49.558

100

0.496
  radA Streptococcus pneumoniae D39

49.558

100

0.496
  radA Streptococcus pneumoniae R6

49.558

100

0.496
  radA Streptococcus pneumoniae TIGR4

49.558

100

0.496
  radA Streptococcus mitis NCTC 12261

49.558

100

0.496
  radA Streptococcus mitis SK321

49.558

100

0.496

Multiple sequence alignment