Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   S9968_RS05310 Genome accession   NZ_CP058666
Coordinates   981647..982156 (+) Length   169 a.a.
NCBI ID   WP_000392200.1    Uniprot ID   Q8DXT4
Organism   Streptococcus agalactiae strain S9968     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 976647..987156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S9968_RS05285 (S9968_101061) - 976666..977535 (+) 870 WP_000858929.1 5'-nucleotidase, lipoprotein e(P4) family -
  S9968_RS05290 (S9968_101062) pgk 977670..978866 (+) 1197 WP_001096753.1 phosphoglycerate kinase -
  S9968_RS05295 (S9968_101063) - 979129..979668 (+) 540 WP_000854121.1 aromatic acid exporter family protein -
  S9968_RS05300 (S9968_101064) - 979748..980119 (+) 372 WP_000664338.1 MerR family transcriptional regulator -
  S9968_RS05305 (S9968_101065) glnA 980153..981499 (+) 1347 WP_000156227.1 type I glutamate--ammonia ligase -
  S9968_RS05310 (S9968_101066) lytF 981647..982156 (+) 510 WP_000392200.1 CHAP domain-containing protein Regulator
  S9968_RS05315 (S9968_101067) rnjA 982314..983993 (-) 1680 WP_000065498.1 ribonuclease J1 -
  S9968_RS05320 (S9968_101068) - 984047..984277 (-) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  S9968_RS05325 (S9968_101069) tsaB 984456..985148 (+) 693 WP_000978604.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  S9968_RS05330 (S9968_101070) rimI 985150..985557 (+) 408 WP_000445945.1 ribosomal protein S18-alanine N-acetyltransferase -
  S9968_RS05335 (S9968_101071) tsaD 985633..986643 (+) 1011 WP_000655087.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18390.30 Da        Isoelectric Point: 4.3039

>NTDB_id=406355 S9968_RS05310 WP_000392200.1 981647..982156(+) (lytF) [Streptococcus agalactiae strain S9968]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASADYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=406355 S9968_RS05310 WP_000392200.1 981647..982156(+) (lytF) [Streptococcus agalactiae strain S9968]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGATTATACAGTAGGGACACAACCGCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGTAACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DXT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

56.818

78.107

0.444
  lytF Streptococcus gordonii str. Challis substr. CH1

56.818

78.107

0.444
  SMU.836 Streptococcus mutans UA159

54.331

75.148

0.408

Multiple sequence alignment