Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   GPA00_RS05690 Genome accession   NZ_CP046629
Coordinates   1120128..1122413 (-) Length   761 a.a.
NCBI ID   WP_027967917.1    Uniprot ID   A0A1G9J8C8
Organism   Streptococcus equinus strain CNU G6     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 1115128..1127413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS05670 (GPA00_05670) - 1115147..1115911 (+) 765 WP_021141864.1 DivIVA domain-containing protein -
  GPA00_RS05675 (GPA00_05675) ileS 1116243..1119041 (+) 2799 WP_024344235.1 isoleucine--tRNA ligase -
  GPA00_RS05680 (GPA00_05680) - 1119130..1119432 (-) 303 WP_004230746.1 DUF1827 family protein -
  GPA00_RS05685 (GPA00_05685) - 1119505..1119951 (-) 447 WP_024344236.1 NUDIX hydrolase -
  GPA00_RS05690 (GPA00_05690) clpE 1120128..1122413 (-) 2286 WP_027967917.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  GPA00_RS05695 (GPA00_05695) argF 1122786..1123760 (+) 975 WP_074639300.1 ornithine carbamoyltransferase -
  GPA00_RS05700 (GPA00_05700) - 1123883..1124113 (+) 231 WP_004230761.1 DUF1797 family protein -
  GPA00_RS05705 (GPA00_05705) - 1124343..1125029 (+) 687 WP_021141871.1 amino acid ABC transporter permease -
  GPA00_RS05710 (GPA00_05710) - 1125029..1125763 (+) 735 WP_004230766.1 amino acid ABC transporter ATP-binding protein -
  GPA00_RS05715 (GPA00_05715) - 1126123..1126599 (+) 477 WP_045798142.1 FeoA family protein -

Sequence


Protein


Download         Length: 761 a.a.        Molecular weight: 84423.44 Da        Isoelectric Point: 4.8733

>NTDB_id=406311 GPA00_RS05690 WP_027967917.1 1120128..1122413(-) (clpE) [Streptococcus equinus strain CNU G6]
MLCQNCHLNESTIHLYTNVNGQQRQIDLCQNCYQIMKTDPNNAILGGLGGNSQPTSNATNQSTNPFDDFFSNLGGFPAFG
GQGFQNTPPTQPGGGNNGRGGNGNGNFRQGAQAQQQEPKGLLEEFGINVTDIARRGDIDPVVGRDSEIIRVIEILNRRTK
NNPVLIGEPGVGKTAVVEGLAQKIVDGNVPQKLQNKQVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRERKDVILFIDEI
HEIVGAGNAGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILRGIQKKYEDY
HHVKYSDDAIEAAANLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKEIDKRLIQAENLKTQATRDEDYERAAYFR
DQIAKYKEMQKQTIDEDDIPVITEKTIEAIVEEKTNIPVGDLKEKEQSQLIHLADDLKEHVIGQDEAVDKIAKAIRRNRV
GLGTPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRN
PYSLILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKAEASVGFGAAREGRTNSVLGQLGDF
FSPEFMNRFDGIIEFKALSKDNLLQIVNIMLDDVNKRLATNDIHLDVTDKVKEKLVDLGYDPKMGARPLRRTIQDYIEDA
ITDFYLEHPTEKDLKAVMTSNGKIIIKSAKKVETEESVSAE

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=406311 GPA00_RS05690 WP_027967917.1 1120128..1122413(-) (clpE) [Streptococcus equinus strain CNU G6]
ATGCTCTGTCAGAATTGTCATTTAAACGAATCAACAATTCACCTGTATACAAATGTTAATGGTCAGCAAAGACAAATTGA
TTTGTGCCAAAACTGCTATCAAATCATGAAAACTGACCCAAATAACGCTATCTTAGGAGGTTTGGGTGGAAATTCTCAAC
CAACCTCTAACGCAACTAATCAATCAACAAATCCTTTCGATGATTTCTTTAGCAATCTCGGTGGCTTCCCTGCATTTGGA
GGTCAAGGATTTCAAAATACCCCTCCAACACAACCTGGTGGAGGAAATAATGGACGTGGCGGCAACGGAAATGGCAACTT
CCGTCAAGGCGCTCAAGCTCAACAACAAGAGCCAAAAGGCTTGTTAGAAGAATTCGGTATCAACGTTACTGATATTGCAC
GACGTGGTGATATCGACCCTGTTGTGGGACGTGATTCTGAAATCATTCGAGTTATCGAAATTCTTAACCGCCGTACAAAA
AACAACCCTGTTTTGATTGGTGAACCCGGTGTTGGTAAAACAGCTGTTGTTGAGGGGCTCGCTCAAAAAATCGTTGATGG
TAACGTTCCTCAAAAACTCCAAAACAAACAAGTCATTCGTCTCGATGTCGTAAGCCTTGTTCAAGGAACTGGTATACGTG
GACAATTTGAAGAACGCATGCAAAAACTCATGGAAGAAATTCGTGAACGCAAAGACGTGATTTTGTTTATCGATGAAATC
CATGAAATTGTTGGTGCTGGTAATGCTGGCGACGGTAATATGGATGCTGGTAACATTTTAAAACCAGCTCTTGCACGTGG
TGAATTACAATTAGTTGGTGCTACTACTCTTAACGAATACCGTATTATCGAAAAAGATGCAGCACTTGAACGTCGTATGC
AACCTGTAAAAGTTGACGAACCAAGTGTTGAAGAAACTATTACAATTCTTCGTGGTATTCAAAAGAAATACGAAGACTAT
CACCATGTCAAATATAGCGATGATGCTATCGAAGCTGCTGCCAACCTCTCAAATCGCTACATCCAAGACCGCTTCCTTCC
AGATAAGGCAATCGACTTGCTTGATGAAGCAGGTTCTAAAATGAACTTGACACTCAACTTTGTTGATCCAAAAGAGATTG
ACAAACGTTTGATTCAAGCTGAAAATCTAAAAACACAAGCTACTCGCGATGAAGATTATGAACGCGCAGCTTATTTCCGT
GATCAAATCGCCAAATATAAAGAAATGCAAAAACAAACGATTGACGAAGATGACATCCCAGTGATTACTGAAAAGACCAT
CGAAGCCATCGTTGAAGAAAAAACAAATATCCCTGTTGGTGATTTGAAAGAAAAAGAACAATCACAATTGATTCACCTTG
CTGATGACTTGAAAGAGCACGTTATCGGTCAAGATGAAGCCGTTGATAAGATTGCCAAAGCCATCCGCCGTAACCGTGTT
GGACTTGGCACACCAAATCGACCAATTGGTTCATTCCTCTTTGTCGGACCAACCGGTGTTGGTAAAACAGAGCTTTCAAA
ACAACTAGCAATTGAACTCTTTGGTTCAGCTGACAGCATGATTCGCTTTGACATGTCTGAATACATGGAAAAACACGCTG
TCGCTAAACTTGTCGGAGCTCCTCCAGGATATGTTGGTTACGAAGAAGCTGGTCAATTGACTGAAAAAGTTCGTCGTAAT
CCATACTCACTCATTCTTCTTGATGAAGTTGAAAAAGCACACCCTGACGTTATGCACATGTTCTTGCAAGTGCTTGACGA
TGGTCGTTTGACTGACGGTCAAGGTCGTACAGTAAGCTTTAAGGATACTATTATCATCATGACTTCAAATGCTGGTACTG
GTAAAGCTGAAGCCTCTGTTGGTTTTGGTGCTGCTCGTGAAGGGCGAACTAATTCCGTTCTTGGTCAACTTGGAGATTTC
TTCAGCCCAGAATTTATGAACCGTTTTGATGGCATCATCGAATTCAAAGCCCTTAGCAAGGACAATCTTCTTCAAATCGT
AAACATCATGCTTGATGATGTTAATAAACGTTTAGCTACAAATGATATTCATCTTGATGTCACAGACAAAGTTAAAGAAA
AACTTGTCGATCTTGGATATGATCCTAAGATGGGAGCTCGTCCGCTTCGTCGAACTATTCAAGATTACATCGAAGATGCC
ATCACTGACTTCTATCTTGAACACCCAACTGAAAAAGATTTAAAAGCCGTGATGACAAGTAATGGTAAGATCATCATTAA
ATCAGCTAAAAAAGTTGAAACCGAAGAATCTGTTTCAGCAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1G9J8C8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

85.43

99.212

0.848

  clpE Streptococcus pneumoniae Rx1

83.026

99.869

0.829

  clpE Streptococcus pneumoniae D39

83.026

99.869

0.829

  clpE Streptococcus pneumoniae R6

83.026

99.869

0.829

  clpE Streptococcus pneumoniae TIGR4

83.026

99.869

0.829

  clpC Lactococcus lactis subsp. cremoris KW2

76.741

100

0.767

  clpC Bacillus subtilis subsp. subtilis str. 168

50.82

88.173

0.448

  clpC Streptococcus pneumoniae Rx1

47.917

81.997

0.393

  clpC Streptococcus pneumoniae D39

47.917

81.997

0.393

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.84

82.129

0.393

  clpC Streptococcus pneumoniae TIGR4

47.756

81.997

0.392

  clpC Streptococcus thermophilus LMD-9

46.166

83.968

0.388

  clpC Streptococcus thermophilus LMG 18311

45.853

83.968

0.385

  clpC Streptococcus mutans UA159

47.021

81.603

0.384


Multiple sequence alignment