Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   HZR83_RS17295 Genome accession   NZ_CP058661
Coordinates   3592176..3592652 (+) Length   158 a.a.
NCBI ID   WP_001354275.1    Uniprot ID   -
Organism   Escherichia coli strain 005008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3587176..3597652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZR83_RS25180 - 3587857..3588030 (-) 174 Protein_3411 cobalamin biosynthesis protein -
  HZR83_RS25185 - 3588009..3588197 (-) 189 Protein_3412 IS4 family transposase -
  HZR83_RS17265 (HZR83_17255) - 3588170..3588334 (-) 165 WP_001128468.1 hypothetical protein -
  HZR83_RS17270 (HZR83_17260) - 3588765..3589010 (+) 246 Protein_3414 transposase -
  HZR83_RS17275 (HZR83_17265) - 3589023..3589655 (-) 633 Protein_3415 IS30-like element IS30 family transposase -
  HZR83_RS17280 (HZR83_17270) - 3589711..3590408 (+) 698 WP_103215986.1 IS1-like element IS1A family transposase -
  HZR83_RS17285 (HZR83_17275) - 3590527..3591345 (+) 819 WP_047149353.1 DUF932 domain-containing protein -
  HZR83_RS17290 (HZR83_17280) - 3591687..3592160 (+) 474 WP_001387789.1 antirestriction protein -
  HZR83_RS17295 (HZR83_17285) radC 3592176..3592652 (+) 477 WP_001354275.1 RadC family protein Machinery gene
  HZR83_RS17300 (HZR83_17290) yeeT 3592721..3592942 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  HZR83_RS17305 (HZR83_17295) - 3593105..3593473 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  HZR83_RS17310 (HZR83_17300) - 3593563..3593940 (+) 378 WP_000854760.1 TA system toxin CbtA family protein -
  HZR83_RS17315 (HZR83_17305) - 3593937..3594086 (+) 150 Protein_3423 DUF5983 family protein -
  HZR83_RS17320 (HZR83_17310) - 3594186..3594266 (+) 81 Protein_3424 hypothetical protein -
  HZR83_RS25010 - 3595082..3595453 (+) 372 WP_001295631.1 IS110 family transposase -
  HZR83_RS25190 - 3595724..3596089 (+) 366 WP_001280454.1 EutP/PduV family microcompartment system protein -
  HZR83_RS17335 (HZR83_17325) tmaR 3596190..3596519 (-) 330 WP_000450409.1 DUF496 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17668.26 Da        Isoelectric Point: 7.2517

>NTDB_id=406282 HZR83_RS17295 WP_001354275.1 3592176..3592652(+) (radC) [Escherichia coli strain 005008]
MQQLSFLPGNMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=406282 HZR83_RS17295 WP_001354275.1 3592176..3592652(+) (radC) [Escherichia coli strain 005008]
ATGCAGCAGCTTTCCTTTCTGCCCGGAAACATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment