Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GPA00_RS02305 Genome accession   NZ_CP046629
Coordinates   460903..462264 (-) Length   453 a.a.
NCBI ID   WP_157328507.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 455903..467264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS02285 (GPA00_02285) - 456335..457501 (-) 1167 WP_157327376.1 CynX/NimT family MFS transporter -
  GPA00_RS02290 (GPA00_02290) gltX 457698..459155 (-) 1458 WP_024344387.1 glutamate--tRNA ligase -
  GPA00_RS02295 (GPA00_02295) - 459334..460260 (-) 927 WP_074480128.1 aldo/keto reductase -
  GPA00_RS02300 (GPA00_02300) - 460289..460786 (-) 498 WP_004233355.1 beta-class carbonic anhydrase -
  GPA00_RS02305 (GPA00_02305) radA 460903..462264 (-) 1362 WP_157328507.1 DNA repair protein RadA Machinery gene
  GPA00_RS02310 (GPA00_02310) - 462279..463361 (-) 1083 WP_157327378.1 hypothetical protein -
  GPA00_RS02315 (GPA00_02315) - 463377..463823 (-) 447 WP_021143233.1 dUTP diphosphatase -
  GPA00_RS02320 (GPA00_02320) - 463850..464617 (-) 768 WP_074629854.1 epoxyqueuosine reductase QueH -
  GPA00_RS02325 (GPA00_02325) - 464823..465839 (+) 1017 WP_157327379.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  GPA00_RS02330 (GPA00_02330) galU 465911..466831 (+) 921 WP_157327381.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49494.87 Da        Isoelectric Point: 6.0979

>NTDB_id=406281 GPA00_RS02305 WP_157328507.1 460903..462264(-) (radA) [Streptococcus equinus strain CNU G6]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSINYSRTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLVGIDMPSSIEVVGVTTVGEVLKKVFK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=406281 GPA00_RS02305 WP_157328507.1 460903..462264(-) (radA) [Streptococcus equinus strain CNU G6]
ATCGCTAAGAAGAAAACAACGTTTATTTGTCAGGAGTGTGGCTATCATTCTCCTAAATATCTAGGACGTTGTCCAAACTG
TTCATCTTGGACGTCTTTTGTTGAAGAAGTCGAAGTACAAGAGGTTAAAAATGCGCGTGTCAGTTTGACAGGTGAAAAGA
GCAAGCCAACCAAATTAAAAGATGTGAGCTCGATTAACTACTCACGCACAAAGACAGATATGGATGAATTTAATCGTGTG
CTTGGTGGCGGTGTGGTACCAGGCAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACCCTGCTTTTGCA
GGTATCAATTCAGCTTGCTGACAAAGGAACGGTTCTTTACGTTTCTGGGGAAGAATCAGCTGAGCAGATTAAACTACGTA
GTGAACGTCTTGGCGACATTGATAATGAATTTTACCTTTATGCTGAGACCAATATGCAAGCCATTCGTGCGCAGATTGAG
CAAATCCAGCCTGATTTCTTAATTATTGACTCGATTCAAACGATTATGAGTCCTGATATTTCAGGAGTCCAAGGTTCGGT
GTCTCAAGTGCGTGAAGTGACAGCAGAGCTCATGCAGTTGGCTAAGACTAATAACATCGCAACCTTTATCGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCTGGTCCGCGTATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAGGGTGAACGC
CATCATACCTTCCGTATCTTGCGTGCAGTGAAAAACCGTTTTGGTTCAACTAATGAAATCGGCATTTTTGAAATGCAATC
TGGTGGGCTGGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTGGAAGAACGCTTGGATGGCGCGACTGGTTCAGCTATCG
TGGTAACCATGGAAGGTAGTCGTCCGATTTTAGCTGAGGTTCAAGCTTTGGTGACACCGACTGTTTTTGGAAATGCCAAA
CGCACAACGACGGGGCTTGATTTCAATCGCGTTAGTCTGATTATGGCGGTACTTGAAAAACGTTGTGGACTTTTATTGCA
AAATCAAGATGCTTATCTCAAATCTGCTGGTGGTGTCAAACTTGATGAGCCAGCGATTGACTTGGCAGTAGCGGTAGCTA
TTGCGTCAAGCTACAAAGAAAAGCCGACAAATCCACAAGAAGCTTTTATCGGTGAAATTGGTTTGACAGGTGAAATCCGT
CGCGTCACTCGTATTGAACAACGTATCAATGAAGCAGCTAAGCTTGGCTTTACAAAAGTTTACGCACCGAAAAATTCTTT
AGTTGGTATTGATATGCCATCATCTATTGAAGTTGTTGGTGTGACAACTGTTGGAGAAGTTCTTAAGAAAGTTTTTAAAT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.496

99.779

0.883
  radA Streptococcus pneumoniae D39

88.496

99.779

0.883
  radA Streptococcus pneumoniae R6

88.496

99.779

0.883
  radA Streptococcus pneumoniae TIGR4

88.496

99.779

0.883
  radA Streptococcus mitis SK321

88.496

99.779

0.883
  radA Streptococcus mitis NCTC 12261

88.274

99.779

0.881
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62

Multiple sequence alignment