Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GO596_RS03750 Genome accession   NZ_CP046628
Coordinates   745005..746366 (+) Length   453 a.a.
NCBI ID   WP_033153501.1    Uniprot ID   A0A6G8HZM5
Organism   Streptococcus equinus strain CNU 77-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 740005..751366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS03720 (GO596_03720) - 740270..740797 (+) 528 WP_157339216.1 5-formyltetrahydrofolate cyclo-ligase -
  GO596_RS03725 (GO596_03725) - 740794..741465 (+) 672 WP_024344393.1 rhomboid family intramembrane serine protease -
  GO596_RS03730 (GO596_03730) galU 741515..742435 (-) 921 WP_157339217.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GO596_RS03735 (GO596_03735) - 742507..743523 (-) 1017 WP_024344391.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  GO596_RS03740 (GO596_03740) - 743729..744496 (+) 768 WP_074629854.1 epoxyqueuosine reductase QueH -
  GO596_RS03745 (GO596_03745) - 744523..744969 (+) 447 WP_021143233.1 dUTP diphosphatase -
  GO596_RS03750 (GO596_03750) radA 745005..746366 (+) 1362 WP_033153501.1 DNA repair protein RadA Machinery gene
  GO596_RS03755 (GO596_03755) - 746482..746979 (+) 498 WP_157339218.1 beta-class carbonic anhydrase -
  GO596_RS03760 (GO596_03760) - 747008..747934 (+) 927 WP_157339219.1 aldo/keto reductase -
  GO596_RS03765 (GO596_03765) gltX 748113..749570 (+) 1458 WP_024344387.1 glutamate--tRNA ligase -
  GO596_RS03770 (GO596_03770) - 749767..750933 (+) 1167 WP_021143228.1 CynX/NimT family MFS transporter -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49450.86 Da        Isoelectric Point: 6.3749

>NTDB_id=406237 GO596_RS03750 WP_033153501.1 745005..746366(+) (radA) [Streptococcus equinus strain CNU 77-23]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSINYSRTKTGMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLAEKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLVGIDMPSSIEVVGVTTVGEVLKKVFK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=406237 GO596_RS03750 WP_033153501.1 745005..746366(+) (radA) [Streptococcus equinus strain CNU 77-23]
ATCGCTAAGAAGAAAACAACGTTTATTTGTCAGGAGTGTGGCTATCATTCTCCTAAATATCTAGGACGTTGTCCAAACTG
TTCATCTTGGACGTCTTTTGTTGAAGAAGTCGAAGTACAAGAGGTTAAAAATGCGCGTGTCAGTTTGACAGGTGAAAAGA
GCAAACCAACTAAGTTGAAGGACGTTAGCTCGATTAATTATTCACGCACAAAGACTGGCATGGATGAATTTAACCGTGTG
CTCGGTGGCGGTGTGGTGCCAGGTAGTCTGGTGCTTATCGGTGGTGACCCAGGTATCGGGAAATCAACGCTTCTTTTGCA
GGTTTCGATTCAGCTGGCAGAGAAAGGAACGGTTCTTTACGTTTCTGGTGAAGAATCAGCTGAGCAGATTAAACTTCGCA
GTGAACGCCTTGGTGACATTGATAATGAATTTTACCTTTATGCTGAGACAAATATGCAAGCAATCCGTGCGCAGATTGAG
CAAATCCAGCCTGATTTCTTAATTATTGACTCGATTCAAACGATTATGAGTCCTGATATTTCAGGAGTCCAAGGTTCGGT
GTCTCAAGTGCGTGAAGTGACAGCAGAGCTCATGCAGTTGGCTAAGACTAATAACATCGCAACCTTTATCGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCTGGTCCGCGTATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAGGGTGAACGC
CATCATACCTTCCGTATCTTGCGTGCAGTGAAAAACCGTTTTGGTTCAACTAATGAAATCGGCATTTTTGAAATGCAATC
TGGTGGGCTGGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTGGAAGAACGCTTGGATGGCGCGACTGGTTCAGCTATCG
TGGTAACCATGGAAGGTAGTCGTCCGATTTTAGCTGAGGTTCAAGCTTTGGTGACACCGACTGTTTTTGGAAATGCCAAA
CGCACAACGACTGGGCTTGATTTTAATCGCGTTAGTCTGATTATGGCGGTACTTGAAAAACGTTGTGGACTTTTATTGCA
AAATCAAGATGCTTATCTCAAATCTGCTGGTGGTGTCAAACTTGATGAGCCAGCGATTGACTTGGCAGTAGCGGTAGCTA
TTGCGTCAAGCTACAAAGAAAAGCCGACAAATCCACAAGAAGCTTTTATCGGTGAAATTGGTTTGACAGGTGAAATTCGT
CGCGTCACTCGTATTGAACAACGTATCAATGAAGCAGCAAAGCTTGGCTTTACAAAAGTTTACGCACCGAAAAATTCTTT
AGTTGGTATTGATATGCCATCATCTATTGAAGTTGTTGGTGTGACAACTGTTGGAGAAGTTCTTAAGAAAGTTTTTAAAT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8HZM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.496

99.779

0.883
  radA Streptococcus pneumoniae D39

88.496

99.779

0.883
  radA Streptococcus pneumoniae R6

88.496

99.779

0.883
  radA Streptococcus pneumoniae TIGR4

88.496

99.779

0.883
  radA Streptococcus mitis SK321

88.496

99.779

0.883
  radA Streptococcus mitis NCTC 12261

88.274

99.779

0.881
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62

Multiple sequence alignment