Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GO596_RS03385 Genome accession   NZ_CP046628
Coordinates   660173..660901 (-) Length   242 a.a.
NCBI ID   WP_157339196.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 655173..665901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS03360 (GO596_03360) - 657397..657750 (+) 354 WP_157339193.1 DUF1304 domain-containing protein -
  GO596_RS03365 (GO596_03365) - 657788..658699 (-) 912 WP_157339194.1 DUF4097 family beta strand repeat-containing protein -
  GO596_RS03370 (GO596_03370) - 658696..659280 (-) 585 WP_024344455.1 DUF1700 domain-containing protein -
  GO596_RS03375 (GO596_03375) - 659267..659593 (-) 327 WP_024344454.1 PadR family transcriptional regulator -
  GO596_RS03380 (GO596_03380) - 659748..660083 (-) 336 WP_157339195.1 hypothetical protein -
  GO596_RS03385 (GO596_03385) treR 660173..660901 (-) 729 WP_157339196.1 trehalose operon repressor Regulator
  GO596_RS03390 (GO596_03390) treP 661099..663075 (+) 1977 WP_157339197.1 PTS system trehalose-specific EIIBC component -
  GO596_RS03395 (GO596_03395) treC 663087..664739 (+) 1653 WP_157339198.1 alpha,alpha-phosphotrehalase -
  GO596_RS03400 (GO596_03400) - 664713..664970 (-) 258 WP_142349771.1 hypothetical protein -
  GO596_RS03405 (GO596_03405) rpmG 665142..665291 (-) 150 WP_002262412.1 50S ribosomal protein L33 -
  GO596_RS03410 (GO596_03410) rpmF 665308..665484 (-) 177 WP_003066947.1 50S ribosomal protein L32 -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27901.97 Da        Isoelectric Point: 8.3314

>NTDB_id=406233 GO596_RS03385 WP_157339196.1 660173..660901(-) (treR) [Streptococcus equinus strain CNU 77-23]
MKKYEQIFKELEHDITSGIYQAGDYLPTENELTQTYHMSRDTIRKALSLLAEAGLIQKIHGSGSQVIKRETIDFPVSKLT
SYKELVDNFGINSKTNVISIDKLIVDEKLVALTGFSKNSLVWRVIRQRVVDGTASVIDIDYLDKKIVPNMTREIAEKSIY
DYLENQLHLSIAYAQKEITIDQLNDRDKLLLDIGAEHHVVSIKSKVYLANNQQFQFTESRHKLEKFRFVDFATRKNLLPT
KH

Nucleotide


Download         Length: 729 bp        

>NTDB_id=406233 GO596_RS03385 WP_157339196.1 660173..660901(-) (treR) [Streptococcus equinus strain CNU 77-23]
ATGAAAAAATACGAACAAATCTTTAAAGAACTTGAACACGATATCACCTCTGGCATTTACCAAGCAGGCGACTATCTCCC
CACCGAAAACGAGCTAACCCAGACCTACCATATGAGCCGTGACACTATCCGCAAAGCGCTTAGCCTCCTTGCCGAAGCAG
GACTTATCCAGAAAATTCACGGTTCTGGCTCACAAGTTATCAAACGCGAAACGATTGACTTTCCTGTTTCAAAATTAACG
AGCTATAAAGAACTTGTCGACAATTTCGGTATTAATTCTAAAACCAACGTCATTTCCATTGATAAGCTGATTGTCGATGA
GAAACTTGTTGCGCTGACAGGATTCTCAAAAAACAGCTTAGTATGGCGCGTGATTCGCCAACGTGTGGTTGATGGCACAG
CTTCTGTCATCGATATTGATTATTTAGATAAAAAAATCGTGCCAAATATGACCCGAGAAATTGCAGAGAAATCTATTTAC
GATTATCTTGAAAATCAACTCCATCTGAGCATCGCTTATGCTCAAAAAGAAATTACCATCGACCAGCTTAACGACCGTGA
CAAACTACTTCTTGATATTGGTGCTGAGCACCACGTCGTTTCAATCAAATCAAAAGTCTATCTTGCCAATAATCAACAGT
TTCAGTTCACCGAAAGTAGACACAAACTTGAAAAATTCCGCTTTGTGGATTTTGCAACACGAAAAAACTTGCTACCGACC
AAACATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

70.94

96.694

0.686

Multiple sequence alignment