Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   GO596_RS01255 Genome accession   NZ_CP046628
Coordinates   248627..249673 (-) Length   348 a.a.
NCBI ID   WP_024344767.1    Uniprot ID   A0A1G9P4A5
Organism   Streptococcus equinus strain CNU 77-23     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 243627..254673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS01250 (GO596_01250) amiF 247695..248627 (-) 933 WP_003067560.1 ABC transporter ATP-binding protein Regulator
  GO596_RS01255 (GO596_01255) oppD 248627..249673 (-) 1047 WP_024344767.1 ABC transporter ATP-binding protein Regulator
  GO596_RS01260 (GO596_01260) - 249685..250716 (-) 1032 WP_039697643.1 ABC transporter permease -
  GO596_RS01265 (GO596_01265) - 250728..251642 (-) 915 WP_021141673.1 ABC transporter permease -
  GO596_RS01270 (GO596_01270) - 251754..253406 (-) 1653 WP_027968240.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38551.10 Da        Isoelectric Point: 4.9467

>NTDB_id=406216 GO596_RS01255 WP_024344767.1 248627..249673(-) (oppD) [Streptococcus equinus strain CNU 77-23]
MSEETILQVKNLHVDFHTYAGEIKAIRDVNFDLKKGETLAIVGESGSGKSVTTKTLMGLSASNATITGEIDFKGKKLTEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKQEAWARALDLMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDVLIADEPTTALDVTIQAQILNLMKKIQKESGSSIIFITHDLGVVAGMADRVAVMYAGKVIEYGSV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPMFKVSDTHYAATWLL
DERAPKVTPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=406216 GO596_RS01255 WP_024344767.1 248627..249673(-) (oppD) [Streptococcus equinus strain CNU 77-23]
ATGAGTGAAGAAACAATTTTACAAGTTAAAAACCTCCATGTAGATTTCCATACCTACGCTGGAGAAATTAAAGCTATCCG
TGATGTCAATTTTGACTTGAAGAAAGGTGAAACCCTTGCTATCGTAGGTGAATCTGGATCAGGTAAATCTGTAACTACAA
AAACATTGATGGGGCTTTCTGCTTCAAATGCAACAATTACAGGTGAAATTGACTTTAAAGGTAAAAAACTTACTGAACTA
AAAGAAGACGAATGGATTAAAGTACGTGGAAATGAAATTGCGATGATTTTCCAAGATCCAATGACAAGTCTTGACCCAAC
AATGAAAATTGGTCAACAGATTGCTGAACCAATTATGATTCACGAAAAAGTTTCAAAACAAGAAGCTTGGGCTCGTGCAC
TAGATTTGATGAAAAATGTTGGTATTCCAAATGCTGAAGAACACATCAATGATTACCCACATCAATGGTCAGGTGGTATG
CGTCAACGTGCGGTTATTGCGATTGCACTTGCGGCTAATCCAGATGTTCTGATTGCAGATGAACCAACAACTGCTTTGGA
CGTTACAATTCAAGCACAAATTCTTAACTTGATGAAGAAAATTCAAAAAGAAAGTGGTTCATCAATTATCTTCATCACAC
ACGACCTTGGTGTTGTTGCTGGTATGGCTGACCGTGTAGCAGTTATGTATGCTGGTAAAGTGATTGAATATGGTTCAGTT
GATGAAGTATTTTACAACCCACAACATCCATATACTTGGGGCTTGTTAAATTCAATGCCAACGACTGATACAGAAGCAGG
TAGCCTACAATCAATCCCAGGTACTCCACCAGATCTTCTTAATCCGCCAAAAGGTGATGCTTTTGCTCCGCGTAATGAAT
TTGCACTAGACATTGATTACGAAGAAGAACCACCAATGTTTAAAGTTAGCGACACACACTATGCAGCAACCTGGTTGCTA
GATGAACGTGCACCTAAAGTAACACCACCATTACCAATTCAAAAACGTTGGGCAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G9P4A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.115

99.713

0.799
  amiE Streptococcus salivarius strain HSISS4

57.018

98.276

0.56
  amiE Streptococcus thermophilus LMG 18311

57.612

96.264

0.555
  amiE Streptococcus thermophilus LMD-9

57.612

96.264

0.555

Multiple sequence alignment