Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GO596_RS00030 Genome accession   NZ_CP046628
Coordinates   6312..8114 (-) Length   600 a.a.
NCBI ID   WP_157338991.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1312..13114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS00010 (GO596_00010) - 3231..4292 (-) 1062 WP_033152243.1 peptidyl-prolyl cis-trans isomerase -
  GO596_RS00015 (GO596_00015) - 4361..5062 (-) 702 WP_004230901.1 O-methyltransferase -
  GO596_RS00020 (GO596_00020) - 5114..5725 (-) 612 WP_157338990.1 HAD-IA family hydrolase -
  GO596_RS00025 (GO596_00025) - 5727..6242 (-) 516 WP_024344290.1 GNAT family N-acetyltransferase -
  GO596_RS00030 (GO596_00030) pepF 6312..8114 (-) 1803 WP_157338991.1 oligoendopeptidase F Regulator
  GO596_RS00035 (GO596_00035) coiA 8114..9076 (-) 963 WP_157338992.1 competence protein CoiA Machinery gene
  GO596_RS00040 (GO596_00040) - 9126..9842 (-) 717 WP_157338993.1 pseudouridine synthase -
  GO596_RS00045 (GO596_00045) nagB 9875..10579 (-) 705 WP_157338994.1 glucosamine-6-phosphate deaminase -
  GO596_RS00050 (GO596_00050) - 10713..11219 (-) 507 WP_021141923.1 VIT1/CCC1 transporter family protein -
  GO596_RS00055 (GO596_00055) queA 11379..12407 (+) 1029 WP_021141922.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69419.40 Da        Isoelectric Point: 4.6161

>NTDB_id=406203 GO596_RS00030 WP_157338991.1 6312..8114(-) (pepF) [Streptococcus equinus strain CNU 77-23]
MSDNRSHIDEKYKWDLSTVFATDDAWEEALAELDSDLEDAKKFKGHLIESSKTLLDITESYLELSRRLEKVYVYASMKND
QDTTVAKYQEFEAKATTLYAKYSEVFAFYEPELMQLSQDDFAKFVAETPELSAYAHFFEKLFKRQEHVLSQKEEELLAGA
HEIFGAAGETFEILDNADIVFPVVLDDEGNEVQLTHGNFISLLESKNRDVRKAAYEAMYATYEQYQHTYAKTLQTNVKVH
NFDARVHHFKSAREAALSANFIPESVYDTLIERVNAHLPLLHRYVELRKKVLKLDDLKMYDIHTPLSEMDMSFTYEEALK
KAEEVLSVFGKDYSERVHRAFTERWIDVHVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKGTIFRQAQFAEFEDIIHKADQNGEVLTSEY
LNSIYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTSDDINRYLDYLKAGNSDYPL
NVIKKAGVDMTSSDYLDAAFKIFEERLNELETLVEKGAYL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=406203 GO596_RS00030 WP_157338991.1 6312..8114(-) (pepF) [Streptococcus equinus strain CNU 77-23]
ATGTCAGATAATCGTAGTCATATTGATGAAAAGTATAAATGGGATTTGAGTACTGTCTTTGCAACAGATGATGCTTGGGA
AGAAGCACTAGCTGAGCTTGATTCAGATTTAGAAGATGCTAAAAAATTTAAAGGGCACTTGATTGAATCAAGTAAGACTT
TGCTCGATATCACTGAAAGTTATCTTGAATTGTCACGCCGCTTGGAAAAAGTTTATGTCTATGCGTCAATGAAAAATGAC
CAAGATACAACAGTTGCTAAATACCAAGAATTCGAAGCAAAAGCAACAACGCTTTACGCCAAATACAGCGAAGTTTTTGC
ATTTTATGAACCAGAATTGATGCAATTATCTCAAGACGATTTCGCCAAATTCGTGGCTGAAACACCAGAGCTTTCAGCTT
ATGCTCATTTCTTTGAAAAACTTTTCAAACGTCAAGAACACGTTTTGTCACAAAAAGAAGAAGAGCTGCTAGCAGGTGCT
CACGAAATCTTTGGTGCAGCTGGAGAGACTTTTGAAATTTTAGATAATGCTGACATTGTCTTTCCTGTTGTTTTGGATGA
TGAGGGCAATGAAGTTCAACTAACACATGGTAACTTCATCAGTCTTTTGGAATCAAAAAATCGCGATGTTCGAAAAGCGG
CTTACGAGGCTATGTATGCTACATACGAACAATATCAACATACTTATGCCAAAACACTTCAAACAAATGTAAAAGTTCAT
AACTTTGATGCTCGTGTTCACCATTTCAAATCAGCGCGTGAAGCAGCACTTTCAGCAAACTTCATTCCTGAATCTGTCTA
CGATACTTTGATTGAACGCGTGAATGCACACTTGCCATTGCTTCATCGTTATGTGGAACTTCGTAAGAAAGTTCTTAAAC
TTGATGATTTGAAAATGTATGATATTCATACACCTTTGTCTGAAATGGATATGAGTTTCACTTACGAGGAAGCTCTGAAA
AAAGCAGAAGAGGTTTTGTCTGTCTTTGGTAAAGATTATTCAGAACGTGTTCATCGAGCTTTCACAGAACGCTGGATTGA
CGTTCATGTCAACAAAGGAAAACGTTCAGGTGCTTATTCTGGTGGGGCTTATGATACAAATGCCTTTATGCTTTTGAACT
GGCAAGATACACTTGATAATCTTTTCACTTTGGTACACGAAACAGGACACAGCCTTCATTCGACTTTTACGCGTGAAACT
CAACCATACGTTTACGGTGATTACAGCATTTTCTTGGCTGAAATTGCTTCAACGACGAATGAAAATATCTTAACAGAAAC
ACTTTTAAAAGAAGTTGATGATGACAAAGCACGCTTTGCAATTTTGAATCACTACTTGGATGGTTTCAAAGGGACTATTT
TCCGTCAAGCACAATTCGCTGAATTTGAAGATATTATCCATAAAGCTGACCAAAATGGTGAAGTTTTGACGAGTGAATAT
CTCAATAGCATTTATGCTGACTTAAATGAAAAATACTACGGACTCAGCAAAGAAGATAATCCAGAAATTCAATACGAATG
GGCACGCATTCCGCATTTCTACTATAATTATTATGTTTATCAATATGCGACAGGTTTTGCGGCAGCAAGTTATCTAGCTG
ACAAAGTAGTTCACGGTACATCAGATGACATTAACCGTTACCTTGATTATCTCAAGGCTGGTAATTCTGATTATCCGTTA
AATGTGATTAAAAAAGCTGGTGTGGACATGACAAGCAGTGATTATTTGGATGCTGCATTCAAGATTTTTGAAGAACGTCT
AAATGAATTAGAAACTTTGGTTGAAAAAGGGGCATACCTTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71

100

0.71

Multiple sequence alignment