Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HZR25_RS08665 Genome accession   NZ_CP058656
Coordinates   1830421..1831848 (-) Length   475 a.a.
NCBI ID   WP_112031983.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC035125     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1825421..1836848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZR25_RS08635 (HZR25_08640) yeeY 1825805..1826734 (+) 930 WP_000803370.1 LysR substrate-binding domain-containing protein -
  HZR25_RS08640 (HZR25_08645) yoeI 1826949..1827011 (+) 63 WP_010723108.1 membrane protein YoeI -
  HZR25_RS08645 (HZR25_08650) plaP 1827001..1828359 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HZR25_RS08655 (HZR25_08660) tsuA 1829178..1830137 (+) 960 Protein_1708 YeeE/YedE family protein -
  HZR25_RS08660 (HZR25_08665) tsuB 1830151..1830378 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HZR25_RS08665 (HZR25_08670) sbcB 1830421..1831848 (-) 1428 WP_112031983.1 exodeoxyribonuclease I Machinery gene
  HZR25_RS08670 (HZR25_08675) dacD 1832057..1833223 (+) 1167 WP_046660321.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HZR25_RS08675 (HZR25_08680) sbmC 1833342..1833815 (+) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -
  HZR25_RS08680 (HZR25_08685) yeeA 1834014..1835072 (+) 1059 WP_001200892.1 FUSC family protein -
  HZR25_RS08685 (HZR25_08690) tmaR 1835244..1835573 (+) 330 WP_000450409.1 DUF496 family protein -
  HZR25_RS24250 - 1835674..1836039 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  HZR25_RS24105 - 1836310..1836699 (-) 390 WP_001445118.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54502.74 Da        Isoelectric Point: 5.3498

>NTDB_id=406175 HZR25_RS08665 WP_112031983.1 1830421..1831848(-) (sbcB) [Escherichia coli strain WCHEC035125]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYEDELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=406175 HZR25_RS08665 WP_112031983.1 1830421..1831848(-) (sbcB) [Escherichia coli strain WCHEC035125]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGTCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGAAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583