Detailed information NTG0406170

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: GO995_RS05515
• Genome accession: NZ_CP046624
• Coordinates: 1088447..1089676 (-)
• Length: 409 a.a.
• NCBI ID: WP_157629093.1
• Uniprot ID: -
• Organism: Streptococcus ruminicola strain CNU_G3
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1083447..1094676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO995_RS05495 (GO995_05495)	-	1084675..1085343 (+)	669	WP_157629499.1	YoaK family protein	-
GO995_RS05500 (GO995_05500)	mmuM	1085375..1086319 (-)	945	WP_157629091.1	homocysteine S-methyltransferase	-
GO995_RS05505 (GO995_05505)	-	1086330..1087706 (-)	1377	WP_157629092.1	amino acid permease	-
GO995_RS05510 (GO995_05510)	yihA	1087843..1088436 (-)	594	WP_074560304.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
GO995_RS05515 (GO995_05515)	clpX	1088447..1089676 (-)	1230	WP_157629093.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
GO995_RS05525 (GO995_05525)	-	1089905..1090399 (-)	495	WP_157629094.1	dihydrofolate reductase	-
GO995_RS05530 (GO995_05530)	-	1090482..1091321 (-)	840	WP_157629095.1	thymidylate synthase	-
GO995_RS05535 (GO995_05535)	-	1091650..1092825 (+)	1176	WP_039696779.1	hydroxymethylglutaryl-CoA synthase	-
GO995_RS05540 (GO995_05540)	-	1092815..1094086 (+)	1272	WP_157629096.1	hydroxymethylglutaryl-CoA reductase, degradative	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45211.75 Da
• Isoelectric Point: 4.4880

>NTDB_id=406170 GO995_RS05515 WP_157629093.1 1088447..1089676(-) (clpX) [Streptococcus ruminicola strain CNU_G3]
MVGNRTNDVKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLAEVPKPKELLATLDEYVVGQER
AKRALAVAVYNHYKRVSFAESRDEEDVELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTIASVPPQGGRKHPNQEMIQINTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQSNRKIDEDASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLTADDLVRI
LTEPRNALVKQYQTLLSYDGVELEFDEDALQAIANKAIERKTGARGLRSIIEETMMDIMFEIPSREEVTKVRITKDAVEG
KDKPILEIA

Nucleotide

• Length: 1230 bp

>NTDB_id=406170 GO995_RS05515 WP_157629093.1 1088447..1089676(-) (clpX) [Streptococcus ruminicola strain CNU_G3]
ATGGTTGGAAATCGAACAAATGATGTAAAAGTTTATTGCTCATTTTGTGGAAAAAGCCAAGACGAAGTAAAAAAAATCAT
TGCCGGAAATAACGTATTTATCTGTAATGAATGTGTGGCTTTATCCCAAGAGATTATTAAAGAGGAGTTAGCAGAAGAAG
TTCTCGCAGATTTGGCTGAAGTTCCAAAACCAAAAGAATTATTAGCAACCCTCGATGAATATGTTGTCGGTCAAGAACGC
GCTAAACGTGCCCTCGCGGTGGCTGTATACAACCACTACAAACGTGTTTCATTTGCCGAAAGTCGTGATGAAGAAGATGT
TGAATTACAAAAATCTAATATCCTATTAATCGGACCAACAGGTTCAGGGAAAACTTTCCTTGCACAAACCTTGGCAAAAA
GTTTAAACGTTCCATTTGCAATTGCTGATGCGACATCATTGACAGAAGCCGGATATGTTGGAGAGGACGTTGAAAATATC
CTTTTGAAACTCATCCAAGCTGCTGATTTTAATATTGAACGTGCAGAACGTGGTATCATCTACGTGGATGAAATTGATAA
AATTGCCAAAAAAGGCGAAAATGTCTCAATCACTCGAGATGTTTCAGGTGAAGGTGTTCAACAAGCTCTCCTTAAAATTA
TCGAAGGAACAATCGCTAGCGTGCCACCACAAGGTGGTCGTAAACACCCTAACCAAGAAATGATTCAAATCAATACTAAG
AACATTCTTTTCATCGTTGGTGGTGCTTTTGATGGTATCGAAGACATTGTTAAACAACGTCTCGGTGAAAAAGTTATTGG
TTTTGGTCAAAGCAACCGCAAGATTGATGAAGATGCTTCTTACATGCAAGAAATCATCTCCGAAGATATTCAAAAATTCG
GTTTGATTCCTGAATTTATCGGACGCTTGCCTGTAGTAGCTGCGCTTGAACAATTGACTGCGGATGATTTGGTTCGTATC
TTGACTGAACCTCGCAATGCCTTGGTTAAACAATACCAAACACTTCTATCATATGATGGTGTTGAGTTGGAATTTGATGA
AGACGCCCTTCAAGCTATTGCTAATAAGGCTATCGAACGTAAGACAGGTGCACGTGGACTTCGTTCAATCATTGAAGAAA
CAATGATGGATATCATGTTTGAAATTCCAAGTCGTGAAGAAGTCACTAAAGTCCGTATCACAAAAGATGCTGTTGAAGGC
AAAGATAAACCAATTTTAGAGATTGCCTAA

Domains

Predicted by InterproScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-390)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.753	100	0.888
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.853	98.044	0.577