Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GOQ09_RS22730 Genome accession   NZ_CP046622
Coordinates   4869632..4870030 (-) Length   132 a.a.
NCBI ID   WP_126749384.1    Uniprot ID   A0A3R9X5Z9
Organism   Variovorax paradoxus strain CSUSB     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4864632..4875030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOQ09_RS22715 (GOQ09_22705) - 4866352..4868670 (-) 2319 WP_157615952.1 methyl-accepting chemotaxis protein -
  GOQ09_RS22720 (GOQ09_22710) - 4868714..4869247 (-) 534 WP_157615954.1 chemotaxis protein CheW -
  GOQ09_RS22725 (GOQ09_22715) - 4869267..4869632 (-) 366 WP_126749383.1 response regulator -
  GOQ09_RS22730 (GOQ09_22720) pilG 4869632..4870030 (-) 399 WP_126749384.1 response regulator Regulator
  GOQ09_RS22735 (GOQ09_22725) - 4870114..4870284 (-) 171 WP_007838397.1 rubredoxin -
  GOQ09_RS22740 (GOQ09_22730) - 4870396..4871361 (+) 966 WP_157615956.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  GOQ09_RS22745 (GOQ09_22735) hemL 4871361..4872656 (+) 1296 WP_157615958.1 glutamate-1-semialdehyde 2,1-aminomutase -
  GOQ09_RS22750 (GOQ09_22740) purH 4872748..4874355 (-) 1608 WP_157615960.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  GOQ09_RS22755 (GOQ09_22745) - 4874372..4874608 (-) 237 WP_007838304.1 Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14711.89 Da        Isoelectric Point: 7.2426

>NTDB_id=406120 GOQ09_RS22730 WP_126749384.1 4869632..4870030(-) (pilG) [Variovorax paradoxus strain CSUSB]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKINDHKPHLIFCDILMPRLDGYQTCAIIKRNAQFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGIVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=406120 GOQ09_RS22730 WP_126749384.1 4869632..4870030(-) (pilG) [Variovorax paradoxus strain CSUSB]
ATGGGGCCGAATGGATCAGGTTACAAGGTGCTTGTCATCGATGACAGCAATACGATCCGGCGCAGTGCCGAAATATTTCT
GAAGCAGGGCGGGCACGAGGTTCTTCTTGCGGAAGACGGCTTTGACGCGCTCTCGAAAATCAACGATCACAAGCCGCATC
TGATTTTCTGCGACATCCTGATGCCCCGCCTGGACGGTTATCAGACCTGCGCCATCATCAAGCGCAACGCTCAATTCTCC
AATGTTCCGGTCGTGATGCTCTCCTCGAAAGACGGCGTCTTCGACAAGGCTCGCGGCCGCATGGTCGGGTCGCAGGACTA
CCTGACCAAACCTTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCATTGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9X5Z9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

63.158

86.364

0.545

Multiple sequence alignment