Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GPJ81_RS22790 Genome accession   NZ_CP046621
Coordinates   5016426..5017793 (-) Length   455 a.a.
NCBI ID   WP_038614855.1    Uniprot ID   A0A077FE36
Organism   Pseudomonas alkylphenolica strain Neo     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5011426..5022793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPJ81_RS22770 (GPJ81_22760) - 5011659..5011856 (-) 198 WP_008094130.1 YbdD/YjiX family protein -
  GPJ81_RS22775 (GPJ81_22765) - 5011875..5013941 (-) 2067 WP_038614847.1 carbon starvation CstA family protein -
  GPJ81_RS22780 (GPJ81_22770) - 5014124..5014489 (+) 366 WP_038614850.1 PilZ domain-containing protein -
  GPJ81_RS22785 (GPJ81_22775) - 5014752..5016272 (+) 1521 WP_038614852.1 nucleobase:cation symporter-2 family protein -
  GPJ81_RS22790 (GPJ81_22780) radA 5016426..5017793 (-) 1368 WP_038614855.1 DNA repair protein RadA Machinery gene
  GPJ81_RS22795 (GPJ81_22785) mscL 5017969..5018382 (+) 414 WP_157194302.1 large-conductance mechanosensitive channel protein MscL -
  GPJ81_RS22800 (GPJ81_22790) - 5018431..5019207 (-) 777 WP_157194303.1 ferredoxin--NADP reductase -
  GPJ81_RS22805 (GPJ81_22795) - 5019452..5020159 (+) 708 WP_157194304.1 autoinducer binding domain-containing protein -
  GPJ81_RS22810 (GPJ81_22800) - 5020248..5021372 (+) 1125 WP_157194810.1 methyltransferase -
  GPJ81_RS22815 (GPJ81_22805) - 5021456..5021611 (-) 156 WP_157194305.1 DUF2474 domain-containing protein -
  GPJ81_RS22820 (GPJ81_22810) cydB 5021624..5022631 (-) 1008 WP_038614873.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48644.12 Da        Isoelectric Point: 6.8313

>NTDB_id=406105 GPJ81_RS22790 WP_038614855.1 5016426..5017793(-) (radA) [Pseudomonas alkylphenolica strain Neo]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETVLESGAAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCAIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIEAIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAIMSSLRNRPLDNSLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=406105 GPJ81_RS22790 WP_038614855.1 5016426..5017793(-) (radA) [Pseudomonas alkylphenolica strain Neo]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACTGAGTGCGGCGCGACCTTTCCGAAATGGGCCGGACAGTGCGGTGAGTG
CGGGGCCTGGAACACCCTGGTCGAGACCGTGCTGGAAAGCGGCGCTGCAGCGGCGCCCAGTGGCCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATCCCGCGCTTCAGCACCGCCAGCGCCGAGCTG
GACCGGGTATTGGGCGGTGGCCTGGTTGACGGTTCGGTGGTACTGATCGGTGGCGACCCGGGTATCGGCAAGTCGACCAT
TCTCCTGCAAACCCTGTGCGCCATCGCTACGCGCATGCCCGCACTGTATGTCACCGGCGAAGAATCCCAGCAGCAGGTGG
CGATGCGTGCCCGGCGCCTGGGATTGCCCCAGGATCAGTTGCGGGTAATGACCGAAACCTGCATCGAGGCAATCATCGCC
ACTGCCCGGGTGGAAAAGCCCAAGGTCATGGTGATCGATTCGATCCAGACCATTTTCACCGAGCAGTTGCAGTCGGCGCC
TGGCGGTGTCTCCCAGGTGCGTGAGAGCGCCGCGTTGCTGGTGCGTTACGCCAAGCAAAGCGGCACGGCGATCTTCCTCG
TCGGTCATGTCACCAAGGAAGGTGCGCTGGCAGGCCCGCGCGTGCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAA
GGCGAATCCGACGGCCGCCTGCGTTTGCTGCGAGCGGTGAAGAACCGTTTCGGTGCGGTCAATGAACTGGGCGTGTTCGG
CATGACCGATCGCGGTTTGAAGGAGGTCTCCAACCCGTCGGCGATCTTCCTCACCCGCGCGCAGGAAGAGGTTCCCGGCA
GTGTGGTCATGGCCACTTGGGAGGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTCGATGACAGTCACCTGTCG
AACCCGCGCCGGGTCACTCTGGGCCTGGACCAGAACCGCCTGGCCATGCTCCTGGCGGTGCTGCATCGCCATGGCGGCAT
TCCGACCCATGACCAGGATGTCTTCCTCAACGTGGTCGGTGGGGTCAAGGTGCTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCAGCGATCATGTCCAGCTTGCGCAACCGTCCGCTGGATAACAGCCTGCTGGTATTCGGCGAAGTCGGCCTGTCGGGT
GAGGTGCGTCCGGTGCCCAGCGGCCAGGAGCGTCTGAAAGAAGCGGCCAAGCATGGTTTCAAACGCGCCATCGTGCCCAA
AGGCAATGCGCCCAAGGAAGCGCCACCAGGTTTGCAGGTGATTGCGGTCACCCGTCTGGAGCAAGCGCTGGATGCGTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077FE36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

46.623

100

0.47
  radA Streptococcus pneumoniae R6

46.623

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.623

100

0.47
  radA Streptococcus pneumoniae D39

46.623

100

0.47
  radA Streptococcus mitis SK321

46.813

100

0.468
  radA Streptococcus mitis NCTC 12261

46.593

100

0.466

Multiple sequence alignment