Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HZR24_RS08655 Genome accession   NZ_CP058651
Coordinates   1828626..1830053 (-) Length   475 a.a.
NCBI ID   WP_112031983.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC035123     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1823626..1835053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZR24_RS08625 (HZR24_08625) yeeZ 1823671..1824495 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HZR24_RS08630 (HZR24_08630) yeeY 1824541..1825470 (+) 930 WP_000803370.1 LysR substrate-binding domain-containing protein -
  HZR24_RS08635 (HZR24_08635) yoeI 1825685..1825747 (+) 63 WP_010723108.1 membrane protein YoeI -
  HZR24_RS08640 (HZR24_08640) plaP 1825737..1827095 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HZR24_RS08645 (HZR24_08645) tsuA 1827277..1828342 (+) 1066 Protein_1706 thiosulfate utilization transporter TsuA/YeeE -
  HZR24_RS08650 (HZR24_08650) tsuB 1828356..1828583 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HZR24_RS08655 (HZR24_08655) sbcB 1828626..1830053 (-) 1428 WP_112031983.1 exodeoxyribonuclease I Machinery gene
  HZR24_RS08660 (HZR24_08660) dacD 1830262..1831428 (+) 1167 WP_046660321.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HZR24_RS08665 (HZR24_08665) sbmC 1831547..1832020 (+) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -
  HZR24_RS08670 (HZR24_08670) yeeA 1832219..1833277 (+) 1059 WP_001200892.1 FUSC family protein -
  HZR24_RS08675 (HZR24_08675) tmaR 1833449..1833778 (+) 330 WP_000450409.1 DUF496 family protein -
  HZR24_RS24410 - 1833879..1834244 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  HZR24_RS24265 - 1834515..1834904 (-) 390 WP_001445118.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54502.74 Da        Isoelectric Point: 5.3498

>NTDB_id=406096 HZR24_RS08655 WP_112031983.1 1828626..1830053(-) (sbcB) [Escherichia coli strain WCHEC035123]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYEDELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=406096 HZR24_RS08655 WP_112031983.1 1828626..1830053(-) (sbcB) [Escherichia coli strain WCHEC035123]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGTCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGAAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583