Detailed information NTG0406083

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HZR24_RS05255
• Genome accession: NZ_CP058651
• Coordinates: 1082939..1083931 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WCHEC035123
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1077939..1088931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZR24_RS05225 (HZR24_05225)	ispD	1078000..1078710 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HZR24_RS05230 (HZR24_05230)	ispF	1078710..1079189 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HZR24_RS05235 (HZR24_05235)	truD	1079186..1080235 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
HZR24_RS05240 (HZR24_05240)	surE	1080216..1080977 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
HZR24_RS05245 (HZR24_05245)	pcm	1080971..1081597 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HZR24_RS05250 (HZR24_05250)	nlpD	1081782..1082876 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HZR24_RS05255 (HZR24_05255)	rpoS	1082939..1083931 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HZR24_RS05260 (HZR24_05260)	ygbN	1084025..1085389 (-)	1365	WP_000104456.1	GntP family transporter	-
HZR24_RS05265 (HZR24_05265)	ygbM	1085478..1086254 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
HZR24_RS05270 (HZR24_05270)	ygbL	1086259..1086897 (-)	639	WP_001278994.1	aldolase	-
HZR24_RS05275 (HZR24_05275)	otnK	1086894..1088156 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=406083 HZR24_RS05255 WP_000081550.1 1082939..1083931(+) (rpoS) [Escherichia coli strain WCHEC035123]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=406083 HZR24_RS05255 WP_000081550.1 1082939..1083931(+) (rpoS) [Escherichia coli strain WCHEC035123]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715