Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   UMN179_RS01265 Genome accession   NC_015460
Coordinates   260247..261200 (-) Length   317 a.a.
NCBI ID   WP_026210961.1    Uniprot ID   -
Organism   Gallibacterium anatis UMN179     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 255247..266200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UMN179_RS01245 (UMN179_00251) - 255561..257483 (-) 1923 WP_013745075.1 ABC transporter ATP-binding protein -
  UMN179_RS01250 (UMN179_00252) - 257598..258506 (-) 909 WP_013745076.1 siderophore ABC transporter substrate-binding protein -
  UMN179_RS01255 (UMN179_00253) - 258537..259298 (-) 762 WP_013745077.1 ABC transporter ATP-binding protein -
  UMN179_RS01260 (UMN179_00254) - 259289..260254 (-) 966 WP_013745078.1 iron chelate uptake ABC transporter family permease subunit -
  UMN179_RS01265 (UMN179_00255) ceuB 260247..261200 (-) 954 WP_026210961.1 ABC transporter permease Machinery gene
  UMN179_RS01270 (UMN179_00256) modA 261397..262155 (-) 759 WP_013745080.1 molybdate ABC transporter substrate-binding protein -
  UMN179_RS01275 (UMN179_00257) modC 262200..263255 (-) 1056 WP_013745081.1 molybdenum ABC transporter ATP-binding protein -
  UMN179_RS01280 (UMN179_00258) modB 263248..263964 (-) 717 WP_013745082.1 molybdate ABC transporter permease subunit -
  UMN179_RS01285 (UMN179_00259) - 263990..264760 (-) 771 WP_013745083.1 ABC transporter permease -
  UMN179_RS01290 (UMN179_00260) - 264761..265702 (-) 942 WP_013745084.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34688.73 Da        Isoelectric Point: 8.9889

>NTDB_id=40607 UMN179_RS01265 WP_026210961.1 260247..261200(-) (ceuB) [Gallibacterium anatis UMN179]
MIQRRYLLLLLAVLSITSLLIGVSSVSISGLLQFDAEQWQILLISRIPRLVSILIAGAGLSICGLIMQQLSRNRFVSPTT
AGTMDCARLGVLLAILCFPDASMLLKSAIAIIAAFAGSLLFMTLLSKLKFTDVIFVPLVGIMFGNIISSMTAFIAYQQDL
LQNLSAWLQGDFSLIMSGRYEMLYISIPTLLFAYIYAQRFSIVGMGEEFATNLGLNYKQVLYLGLAIVSIVSAIVIVTVG
VIPFLGLIIPNIVALYLGDNLRNTLSHTALLGAIFVLFCDILGRIVIYPYEISINAVVGVFGSAIFLYLLFKRYRNA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=40607 UMN179_RS01265 WP_026210961.1 260247..261200(-) (ceuB) [Gallibacterium anatis UMN179]
ATGATTCAACGACGATATCTGTTGTTATTATTGGCGGTATTATCAATTACTTCTTTATTAATCGGTGTGAGTTCTGTCTC
TATTAGCGGTCTACTACAATTTGATGCCGAACAGTGGCAAATTTTATTGATCAGCCGTATTCCTCGTTTAGTGAGCATTT
TGATTGCCGGTGCCGGTTTAAGTATTTGTGGCTTAATTATGCAACAACTTAGTCGTAATCGCTTTGTTTCGCCAACCACC
GCCGGAACGATGGATTGTGCGCGATTAGGCGTGTTATTAGCTATTCTTTGCTTTCCTGATGCTTCAATGTTATTAAAATC
GGCTATTGCAATTATTGCCGCATTTGCCGGCTCATTATTATTTATGACTTTATTGTCAAAACTAAAATTTACCGATGTTA
TTTTTGTGCCGCTAGTTGGCATTATGTTTGGCAATATTATTAGTTCTATGACCGCTTTTATCGCCTATCAACAAGATTTA
TTACAAAATTTATCTGCTTGGTTGCAAGGTGATTTTTCGCTAATTATGAGTGGACGCTATGAGATGCTTTATATCAGCAT
CCCAACATTATTATTTGCATATATTTATGCGCAACGTTTTTCTATTGTCGGGATGGGAGAAGAATTTGCCACCAACTTAG
GATTAAATTATAAGCAGGTACTTTATTTAGGACTAGCCATTGTTTCGATTGTGTCCGCTATTGTTATTGTTACCGTAGGA
GTCATTCCTTTTTTAGGATTAATTATCCCAAATATTGTCGCTTTATATTTAGGAGATAACTTACGCAATACTTTGTCGCA
TACAGCATTATTAGGTGCTATTTTTGTATTATTTTGCGATATTCTTGGACGCATTGTGATTTATCCTTATGAAATTTCGA
TTAATGCCGTAGTTGGAGTTTTTGGTAGTGCTATTTTCCTCTATTTATTATTTAAAAGGTATCGTAATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.074

97.476

0.517

Multiple sequence alignment