Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GO600_RS09025 Genome accession   NZ_CP046617
Coordinates   1694970..1695884 (+) Length   304 a.a.
NCBI ID   WP_028494170.1    Uniprot ID   -
Organism   Thermus antranikianii strain JCM 19900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1689970..1700884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO600_RS09000 (GO600_08945) lptB 1691101..1691829 (-) 729 WP_015716479.1 LPS export ABC transporter ATP-binding protein -
  GO600_RS09005 (GO600_08950) gltX 1691884..1693301 (+) 1418 Protein_1764 glutamate--tRNA ligase -
  GO600_RS09010 (GO600_08955) - 1693333..1693773 (+) 441 WP_015716477.1 hypothetical protein -
  GO600_RS11745 - 1693821..1694911 (+) 1091 Protein_1766 ISAs1 family transposase -
  GO600_RS09025 (GO600_08970) pilA 1694970..1695884 (+) 915 WP_028494170.1 signal recognition particle-docking protein FtsY Machinery gene
  GO600_RS09030 (GO600_08975) - 1695945..1699283 (+) 3339 WP_157626402.1 Eco57I restriction-modification methylase domain-containing protein -
  GO600_RS09035 (GO600_08980) - 1699280..1700410 (+) 1131 WP_028494171.1 hypothetical protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 32896.17 Da        Isoelectric Point: 7.3620

>NTDB_id=406068 GO600_RS09025 WP_028494170.1 1694970..1695884(+) (pilA) [Thermus antranikianii strain JCM 19900]
MGFFDRLKAGLAKTRETLLKAIPWGGSPEEVLEELEMALLAADVGLEATEELLAEVRASGRKDLKEAVKEKLVQMLEPDE
RRATLRKLGFRPQNPKPIEPQGHVVLVVGVNGVGKTTTIAKLGRYYRNLGKKVMFCAGDTFRAAGGAQLSEWGKRLDIPV
IQGPEGADPAALAFDAASARKARGYDLLLVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA
KRFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFIGVGEGPDDLQPFDAEAFVEALLEG

Nucleotide


Download         Length: 915 bp        

>NTDB_id=406068 GO600_RS09025 WP_028494170.1 1694970..1695884(+) (pilA) [Thermus antranikianii strain JCM 19900]
ATGGGCTTCTTTGACCGATTGAAAGCCGGCCTCGCCAAGACGCGGGAAACCCTCCTCAAGGCCATCCCCTGGGGCGGAAG
CCCGGAGGAGGTCCTGGAGGAGCTGGAAATGGCCCTCCTTGCCGCCGACGTGGGCCTCGAGGCCACCGAGGAGCTCCTGG
CCGAGGTAAGGGCCTCGGGGCGGAAGGACCTGAAGGAGGCCGTTAAGGAGAAACTTGTCCAGATGCTGGAGCCGGACGAG
CGCCGGGCCACCTTGAGGAAGCTTGGCTTCCGCCCGCAAAACCCCAAGCCCATAGAACCCCAGGGCCACGTGGTCCTGGT
GGTGGGGGTGAACGGGGTGGGCAAGACCACCACCATCGCCAAGCTGGGCCGCTATTACCGGAACCTGGGCAAGAAGGTGA
TGTTCTGCGCCGGGGATACCTTCCGCGCCGCCGGGGGAGCCCAGCTTTCCGAGTGGGGGAAACGCCTGGACATCCCCGTG
ATCCAAGGGCCGGAAGGCGCCGATCCCGCCGCTTTGGCCTTTGATGCGGCAAGCGCCCGGAAAGCCAGGGGTTACGACCT
CCTCCTGGTGGACACCGCAGGCCGCCTCCACACCAAGCACAACCTGATGGAGGAGCTGAAGAAGGTGAAGCGGGCCATCG
CCAAGGCCGACCCCGAGGAGCCCAAGGAGGTCTGGCTGGTACTGGATGCCGTCACCGGGCAAAACGGCCTGGAGCAGGCC
AAGCGCTTCCACGAGGCGGTGGGGCTCACCGGGGTCATCGTCACCAAGCTGGACGGCACCGCCAAGGGGGGGGTCCTCAT
CCCCATCGTGCGCACCCTCAAGGTGCCCATCAAGTTCATCGGCGTAGGGGAAGGCCCTGACGACCTCCAGCCCTTCGACG
CCGAGGCCTTTGTGGAAGCCCTCCTGGAGGGGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(104-302)

SRP54-type protein, helical bundle domain (SRP54_N)

(29-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.045

100

0.507

Multiple sequence alignment