Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   GO005_RS19325 Genome accession   NZ_CP046592
Coordinates   3741880..3741999 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain TR21     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3736880..3746999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS19305 (GO005_19295) albG 3737044..3737745 (+) 702 WP_015250988.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  GO005_RS19310 (GO005_19300) ywhL 3737751..3739127 (-) 1377 WP_032722701.1 YncE family protein -
  GO005_RS19315 (GO005_19305) ywhK 3739166..3740521 (-) 1356 WP_032722703.1 YncE family protein -
  GO005_RS21420 (GO005_19310) - 3740518..3740748 (-) 231 WP_009968328.1 hypothetical protein -
  GO005_RS19320 (GO005_19315) rapF 3740751..3741896 (+) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  GO005_RS19325 (GO005_19320) phrF 3741880..3741999 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  GO005_RS19330 (GO005_19325) - 3742113..3742563 (+) 451 Protein_3777 YbaK/EbsC family protein -
  GO005_RS19335 (GO005_19330) speB 3742595..3743467 (-) 873 WP_032722706.1 agmatinase -
  GO005_RS19340 (GO005_19335) speE 3743528..3744358 (-) 831 WP_003227543.1 spermidine synthase -
  GO005_RS19345 (GO005_19340) pbpG 3744560..3746635 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=405910 GO005_RS19325 WP_009968329.1 3741880..3741999(+) (phrF) [Bacillus subtilis strain TR21]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=405910 GO005_RS19325 WP_009968329.1 3741880..3741999(+) (phrF) [Bacillus subtilis strain TR21]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment