Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GO005_RS16305 Genome accession   NZ_CP046592
Coordinates   3146240..3146884 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain TR21     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3141240..3151884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS16270 (GO005_16265) mrpB 3142432..3142863 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  GO005_RS16275 (GO005_16270) mrpC 3142863..3143204 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GO005_RS16280 (GO005_16275) mrpD 3143197..3144678 (+) 1482 WP_029725869.1 Na+/H+ antiporter subunit D -
  GO005_RS16285 (GO005_16280) mrpE 3144684..3145160 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  GO005_RS16290 (GO005_16285) mrpF 3145160..3145444 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  GO005_RS16295 (GO005_16290) mnhG 3145428..3145802 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  GO005_RS16300 (GO005_16295) yuxO 3145841..3146221 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  GO005_RS16305 (GO005_16300) comA 3146240..3146884 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GO005_RS16310 (GO005_16305) comP 3146965..3149277 (-) 2313 WP_032722435.1 histidine kinase Regulator
  GO005_RS16315 (GO005_16310) comX 3149293..3149514 (-) 222 WP_014480704.1 competence pheromone ComX -
  GO005_RS16320 (GO005_16315) - 3149516..3150379 (-) 864 WP_032722437.1 polyprenyl synthetase family protein -
  GO005_RS16325 (GO005_16320) degQ 3150564..3150704 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GO005_RS16330 (GO005_16325) - 3150926..3151051 (+) 126 WP_003228793.1 hypothetical protein -
  GO005_RS16335 (GO005_16330) - 3151165..3151533 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=405898 GO005_RS16305 WP_003220716.1 3146240..3146884(-) (comA) [Bacillus subtilis strain TR21]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=405898 GO005_RS16305 WP_003220716.1 3146240..3146884(-) (comA) [Bacillus subtilis strain TR21]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment