Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GO005_RS12775 Genome accession   NZ_CP046592
Coordinates   2492258..2493025 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain TR21     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2487258..2498025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS12755 (GO005_12735) ppsR 2487433..2488245 (-) 813 WP_032722128.1 pyruvate, water dikinase regulatory protein -
  GO005_RS12760 (GO005_12740) ccpN 2488271..2488909 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  GO005_RS12765 (GO005_12745) glyS 2489042..2491081 (-) 2040 WP_032722129.1 glycine--tRNA ligase subunit beta -
  GO005_RS12770 (GO005_12750) glyQ 2491074..2491961 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  GO005_RS12775 (GO005_12755) recO 2492258..2493025 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  GO005_RS12780 (GO005_12760) yqzL 2493062..2493205 (-) 144 WP_003230053.1 YqzL family protein -
  GO005_RS12785 (GO005_12765) era 2493353..2494258 (-) 906 WP_003230051.1 GTPase Era -
  GO005_RS12790 (GO005_12770) - 2494239..2494649 (-) 411 WP_032722130.1 cytidine deaminase -
  GO005_RS12795 (GO005_12775) unpK 2494768..2495139 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  GO005_RS12800 (GO005_12780) ybeY 2495120..2495593 (-) 474 WP_032722131.1 rRNA maturation RNase YbeY -
  GO005_RS12805 (GO005_12785) pgpH 2495594..2497729 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=405885 GO005_RS12775 WP_014477369.1 2492258..2493025(-) (recO) [Bacillus subtilis strain TR21]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=405885 GO005_RS12775 WP_014477369.1 2492258..2493025(-) (recO) [Bacillus subtilis strain TR21]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment