Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   GO005_RS12240 Genome accession   NZ_CP046592
Coordinates   2401330..2402133 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain TR21     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2396330..2407133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS12215 (GO005_12195) glpQB 2397476..2398207 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  GO005_RS12220 (GO005_12200) yqiI 2398286..2398906 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  GO005_RS12225 (GO005_12205) yqiH 2398921..2399214 (-) 294 WP_003230284.1 lipoprotein -
  GO005_RS12230 (GO005_12210) - 2399522..2399674 (+) 153 WP_003230276.1 hypothetical protein -
  GO005_RS12235 (GO005_12215) yqiG 2399747..2400865 (+) 1119 WP_032722090.1 NADH-dependent flavin oxidoreductase -
  GO005_RS12240 (GO005_12220) spo0A 2401330..2402133 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  GO005_RS12245 (GO005_12225) spoIVB 2402409..2403689 (-) 1281 WP_032722092.1 SpoIVB peptidase -
  GO005_RS12250 (GO005_12230) recN 2403864..2405594 (-) 1731 WP_029317928.1 DNA repair protein RecN Machinery gene
  GO005_RS12255 (GO005_12235) argR 2405631..2406080 (-) 450 WP_003230265.1 arginine repressor ArgR -
  GO005_RS12260 (GO005_12240) yqxC 2406178..2407023 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=405874 GO005_RS12240 WP_003226427.1 2401330..2402133(-) (spo0A) [Bacillus subtilis strain TR21]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=405874 GO005_RS12240 WP_003226427.1 2401330..2402133(-) (spo0A) [Bacillus subtilis strain TR21]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment