Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GO005_RS11255 Genome accession   NZ_CP046592
Coordinates   2224107..2224727 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain TR21     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2219107..2229727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS11215 (GO005_11200) ptsA 2220238..2220744 (-) 507 WP_026009842.1 PTS glucose transporter subunit IIA -
  GO005_RS11220 (GO005_11205) ypqA 2220882..2221301 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  GO005_RS11225 (GO005_11210) sppG 2221322..2221699 (-) 378 WP_004398696.1 YppG family protein -
  GO005_RS11230 (GO005_11215) yppF 2221887..2222075 (+) 189 WP_003230690.1 YppF family protein -
  GO005_RS11235 (GO005_11220) yppE 2222114..2222485 (-) 372 WP_003246080.1 YppE family protein -
  GO005_RS11240 (GO005_11225) yppD 2222531..2222776 (-) 246 WP_032722030.1 YppD family protein -
  GO005_RS11245 (GO005_11230) sspM 2222975..2223079 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  GO005_RS11250 (GO005_11235) yppC 2223104..2224066 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  GO005_RS11255 (GO005_11240) recU 2224107..2224727 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  GO005_RS11260 (GO005_11245) ponA 2224749..2227493 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  GO005_RS11265 (GO005_11250) ypoC 2227569..2228063 (-) 495 WP_009967579.1 YpoC family protein -
  GO005_RS11270 (GO005_11255) nth 2228060..2228719 (-) 660 WP_009967580.1 endonuclease III -
  GO005_RS11275 (GO005_11260) dnaD 2228738..2229436 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=405873 GO005_RS11255 WP_004399067.1 2224107..2224727(+) (recU) [Bacillus subtilis strain TR21]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=405873 GO005_RS11255 WP_004399067.1 2224107..2224727(+) (recU) [Bacillus subtilis strain TR21]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment