Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GO005_RS04820 Genome accession   NZ_CP046592
Coordinates   942567..943361 (+) Length   264 a.a.
NCBI ID   WP_003233555.1    Uniprot ID   -
Organism   Bacillus subtilis strain TR21     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 937567..948361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS04790 (GO005_04780) sxzA 938406..939437 (+) 1032 WP_003233568.1 iron ABC transporter permease -
  GO005_RS04795 (GO005_04785) yfhB 939552..940433 (+) 882 WP_032723009.1 PhzF family phenazine biosynthesis isomerase -
  GO005_RS04800 (GO005_04790) yfhC 940521..941105 (+) 585 WP_032723010.1 nitroreductase -
  GO005_RS04805 (GO005_04795) yfhD 941144..941335 (-) 192 WP_003233561.1 YfhD family protein -
  GO005_RS04810 (GO005_04800) yfhE 941402..941512 (-) 111 WP_003223230.1 YfhE family protein -
  GO005_RS04815 (GO005_04805) yfhF 941567..942478 (-) 912 WP_003244332.1 TIGR01777 family oxidoreductase -
  GO005_RS04820 (GO005_04810) recX 942567..943361 (+) 795 WP_003233555.1 recombination regulator RecX Regulator
  GO005_RS04825 (GO005_04815) yfhH 943363..943677 (+) 315 WP_003233553.1 YfhH family protein -
  GO005_RS04830 (GO005_04820) yfhI 943821..945014 (+) 1194 WP_080010604.1 MFS transporter -
  GO005_RS04835 (GO005_04825) sspK 945046..945198 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  GO005_RS04840 (GO005_04830) yfhJ 945323..945592 (+) 270 WP_003243789.1 YfhJ family protein -
  GO005_RS04845 (GO005_04835) yfhK 945737..946255 (+) 519 WP_032677434.1 SH3 domain-containing protein -
  GO005_RS04850 (GO005_04840) spdL 946340..946672 (+) 333 WP_032677433.1 SdpC immunity protein SpdL -
  GO005_RS04855 (GO005_04845) ephM 946659..947519 (+) 861 WP_003233547.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31001.22 Da        Isoelectric Point: 6.6686

>NTDB_id=405849 GO005_RS04820 WP_003233555.1 942567..943361(+) (recX) [Bacillus subtilis strain TR21]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFASAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTKE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=405849 GO005_RS04820 WP_003233555.1 942567..943361(+) (recX) [Bacillus subtilis strain TR21]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAAATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATCGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCTCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAAGGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992

Multiple sequence alignment