Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   SSUJS14_RS04270 Genome accession   NC_017618
Coordinates   863516..867166 (+) Length   1216 a.a.
NCBI ID   WP_012775061.1    Uniprot ID   -
Organism   Streptococcus suis JS14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 858516..872166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUJS14_RS11340 (SSUJS14_0843) - 859723..859959 (+) 237 WP_014636380.1 LPXTG cell wall anchor domain-containing protein -
  SSUJS14_RS04265 (SSUJS14_0844) rexB 860250..863516 (+) 3267 WP_014636381.1 ATP-dependent nuclease subunit B Machinery gene
  SSUJS14_RS04270 (SSUJS14_0845) rexA 863516..867166 (+) 3651 WP_012775061.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SSUJS14_RS04275 (SSUJS14_0846) plsY 867288..867932 (-) 645 WP_012775062.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  SSUJS14_RS04280 (SSUJS14_0847) parE 868075..870018 (+) 1944 WP_014636382.1 DNA topoisomerase IV subunit B -
  SSUJS14_RS04285 (SSUJS14_0848) - 870048..870860 (+) 813 WP_011922289.1 hypothetical protein -
  SSUJS14_RS04290 (SSUJS14_0850) - 871041..871647 (+) 607 Protein_790 Fic family protein -

Sequence

Protein


Download         Length: 1216 a.a.        Molecular weight: 139726.08 Da        Isoelectric Point: 5.0598

>NTDB_id=40581 SSUJS14_RS04270 WP_012775061.1 863516..867166(+) (rexA) [Streptococcus suis JS14]
MAFEQFLSAEEIKAVQLAEAHSDKQQKRTAEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGIGIDQLFISTFT
VKAAGELKERIEKKLNETIAETTDMELRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDQLFADYLEEDENGAFRKLVRNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYSQERIEQMLEQG
FKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINNQSRGKGLTNANRPK
DEHLIAFKEEYNAGKSQIISELRDLGQEVYELTLLKDYQVQALPLLILLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAI
RILEENADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQANPQSG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKNEMEYLIYDQQDSANSSTDAEEETP
LTAGEIEVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPL
NDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQASGQHPELMSEKLKKKITDFLSILENWRAYAKLHSIYD
MIWKMFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQ
MRLLYVALTRAEKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTE
EKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYEPILEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVRAALEAVHAEQAIKDKINVQMILDFFDTDLGREILANTD
KLHREAPFASLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPIQLSQRYQAQMQLYAEALKKAYKIDRVDCH
LILLGGERIEVVEVNI

Nucleotide


Download         Length: 3651 bp        

>NTDB_id=40581 SSUJS14_RS04270 WP_012775061.1 863516..867166(+) (rexA) [Streptococcus suis JS14]
ATGGCTTTTGAACAATTTTTAAGCGCGGAAGAAATCAAGGCTGTGCAGCTGGCGGAAGCCCATTCTGATAAGCAGCAAAA
ACGCACAGCTGAGCAGATTGAAGCTATCTACACGCACGGTCAGAATGTTCTGGTCTCTGCATCGGCTGGGTCAGGAAAGA
CTTTCGTCATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGTATAGGGATTGACCAGCTCTTTATCTCGACCTTTACA
GTCAAGGCGGCTGGTGAATTGAAGGAGCGGATTGAGAAAAAGCTCAATGAAACTATTGCGGAGACGACCGATATGGAATT
GCGTCGGCATTTGTCGGCCCAGTTGGCAGATTTGACTAAGGCGGATATTGGGACCATGGACTCCTTTACGCAGAAATTGG
TGACCACCTATGGTTATAGCCTTGGTATTTCTCCGCAGTTTCGGATTTTACAGGATGAGACTGAAAAAGCGAGTCTGAAA
AAAGAGGTTTTTGACCAGCTCTTTGCAGATTATCTTGAAGAGGATGAAAATGGTGCATTCCGCAAACTGGTTCGCAATTT
TTCGGGCAACCGCAAGGATAATAGTGGTTTCCGTCAGGTTGTTTATCAGGTGCATGATTTTAGCCAATCGACGAGCAGTC
CAACTAAATGGCTGAAAGAACAGGCTGTTCAAGCTGATTTGTACAGTCAAGAGCGTATAGAGCAGATGCTAGAGCAAGGC
TTTAAGGAAAAAGTGTTAGACAAGCTCTATCAAGCTGCAGATTTCTTCCGCTACCATGTGGAATGGGGCAGAAATGACTT
TGGGTCTGCTAAATATTTTGCAAATGTGGAAGAAGTCTTGGATTTGTTGACAGGTTTAGATAGTCTGGACCAGAAGGACT
TGATGGAACGGGTTGAAAGAATTCTTCTCATCAATAATCAGTCCAGAGGCAAGGGCCTGACCAATGCCAATCGACCAAAA
GATGAGCATTTGATAGCCTTTAAAGAAGAATACAATGCTGGTAAGAGCCAGATTATCTCAGAACTACGAGATTTGGGTCA
GGAAGTTTATGAATTGACCCTGCTGAAAGACTATCAGGTTCAAGCTTTGCCACTACTGATATTATTACGTGACTTTGTCT
TGGATTTTTCGCAGGCTTATCTGGATGTCAAAATCAAGGAAGCAGCCTTTGAATTTGGCGACATTGGGCATTTCGCTATT
CGTATTTTAGAAGAAAATGCGGACATTCGCCAGTTTTTCCAAGAGAAATATCACGAAGTCATGGTGGACGAGTACCAGGA
TAACAACCATAGCCAAGAGCGAATGCTGGACCTGCTGTCTAACGGTCACAACCGCTTTATGGTGGGTGATATTAAGCAGT
CCATCTATCGATTCCGTCAGGCGGATCCGATGATTTTCCAAGAGAAATTTGAACTGTATCAGGCAAATCCTCAGTCTGGG
AAATTGATTTTGCTCAAGGAAAATTTCCGTAGTCAGATTGAAGTCTTGGAGGCAACAAATGCTATTTTCACGCGCCTGAT
GGACCGTCAAGTAGGGGAAATCAAGTATGACGACACCCACAGTCTAGTGGCTGGTAGTCCTGGTCAAAAAATTGCCCAGC
CCAAGAATGAGATGGAATACTTGATTTACGATCAGCAGGATAGCGCAAACTCTTCAACAGATGCTGAGGAAGAAACACCT
CTGACTGCTGGTGAAATTGAGGTCGTTGCAAAAGAGATTATTCGTCTTCACAATGAAGAAGGAGCAGACTTCAAGGACAT
CACTCTCTTGGTACAAAAGCGGACGCACAATGACCTCATTATGTCCATTTTTGAAAAACATGGGATTCCAATTGTGGCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATCATGCTGGATACCTTGCGGGTTATCAATAATCCACTC
AATGACTATGCCTTGGTTGCCCTGCTTAAATCACCTATGTTCCGATTCGATGAAGATGAACTGACACGGATTTCCTTGCA
GGCCGGGACAGGTTTCTTTTACCAGAAAATGGAAATAGCCCAGCAAGCAAGTGGGCAACATCCTGAACTGATGTCAGAAA
AGTTGAAGAAGAAAATCACGGATTTCTTGTCTATTTTGGAAAATTGGCGTGCCTATGCCAAACTGCATTCTATTTATGAC
ATGATTTGGAAGATGTTCAATGAAAAATTCTACTATGACTATGTCGGTGCGCTTCCAAATGGCAGCAAGCGTCAGGCCAA
TCTATACGCACTTGGTCTGCGTGCCAACCAGTTTGAAAAAACAGGCTACAAGGGATTGTCTCGCTTCATCGCCATGATTG
ATCGTGCCTTAGCAAATGACAAGGACTTGGCAGATGTACAAGAGTTTCTACCGCAAAATGCTGTACAGCTTATGACTATT
CACAAGTCAAAAGGTTTGGAGTTCAAGTATGTCTTCCTCATGAACATCGATAAGCGATTTAACTTGGAAGACCATTACCA
ATCAGTCATCATCAGCCGGAAAAATGGTCTAGGTATCCAATATTTAGCAGATATGAAAGATAAGGTAAATAGCCCATTAC
CTCAGGTGCGAGTCTTAATGAACACCCTCCCTTATCAAAATAATCTCCAAGAGCTAAAAATTGCCAATCTTTCGGAACAA
ATGCGGTTGCTTTATGTTGCACTAACACGTGCTGAGAAGAAGCTGTATCTGGTTGGAAAGGGTAATGCTGACAAGTTAGC
TGAAAAATACGATGGCAAAAAGGAAAATGGCGTACTAGCCCAATCAACTCGTGAAAGTATGGCGACCTTCCAAGACTGGA
TTCTAGCCATTGATGAGGCCTTCTCAGGAGAAGACTTGCACTTCAAGAAAGTCTTTGTGACGGATGAGGATTTGACAGAG
GAGAAGATTGGTAAACTTACATTGAAGAGTAAGCTAGAAGACGCCAGCCTTAAAGATATTCGTCAATCAGAAGACATCGC
CCAGGCCTTGGACCAGTTGTCTTCTGTCCAAGAGTTGAACGAACGCTATAAGGCTGCTATAGAATTGCCAAGTTTACGGA
CTCCAAGTCAAATCAAGAAGCTCTATGAGCCTATTTTGGAACAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCCAAA
CGGACCTTCAACTTGCCAGATTTCTCCAAGAAACCAAAAATCACTGGAGCCCAAGTCGGTTCAGCAGTGCATGAACTCAT
GCAACGCTTGGATCTGTCTTGGTTGGTGACAGAAGATACGGTAAGAGCAGCCCTAGAAGCTGTTCATGCTGAGCAAGCGA
TTAAAGATAAAATCAATGTTCAGATGATTTTGGATTTCTTTGATACAGACTTAGGAAGAGAAATTCTAGCCAATACGGAC
AAACTCCACCGAGAAGCTCCATTTGCAAGTTTGCAGACAGATTCTGTATCTCAGGAAAACTTTGTCCTTCGTGGGATTAT
CGATGGCTACCTACTGTATGATGATCATATTGTCCTCTTTGATTACAAGACAGACAAATATGACCAACCAATCCAACTCA
GCCAACGTTACCAAGCTCAAATGCAACTCTATGCGGAGGCATTGAAAAAAGCCTACAAGATAGATCGTGTAGACTGCCAT
TTGATTTTGCTTGGTGGGGAGAGAATAGAAGTGGTCGAAGTCAACATATAG

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1192)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-471)

UvrD-like helicase C-terminal domain (UvrD_C)

(483-897)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.085

100

0.524

Multiple sequence alignment