Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GO004_RS13805 Genome accession   NZ_CP046591
Coordinates   2640192..2640482 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain R31     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2635192..2645482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS13790 (GO004_13780) yabE 2635387..2636700 (-) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -
  GO004_RS13795 (GO004_13785) dayD 2636856..2637623 (-) 768 WP_195727670.1 TatD family hydrolase -
  GO004_RS13800 (GO004_13790) metG 2637703..2639697 (-) 1995 WP_029726394.1 methionine--tRNA ligase -
  GO004_RS13805 (GO004_13795) abrB 2640192..2640482 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  GO004_RS13810 (GO004_13800) rsmI 2640531..2641409 (-) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GO004_RS13815 (GO004_13805) yazA 2641384..2641683 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  GO004_RS13820 (GO004_13810) trmNF 2641670..2642413 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  GO004_RS13825 (GO004_13815) yabA 2642472..2642831 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  GO004_RS13830 (GO004_13820) ricT 2642846..2643673 (-) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  GO004_RS13835 (GO004_13825) holB 2643676..2644665 (-) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  GO004_RS13840 (GO004_13830) yaaR 2644677..2645117 (-) 441 WP_009966249.1 YaaR family protein -
  GO004_RS13845 (GO004_13835) darA 2645130..2645459 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=405808 GO004_RS13805 WP_003226760.1 2640192..2640482(+) (abrB) [Bacillus subtilis strain R31]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=405808 GO004_RS13805 WP_003226760.1 2640192..2640482(+) (abrB) [Bacillus subtilis strain R31]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment