Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GO004_RS09555 Genome accession   NZ_CP046591
Coordinates   1785200..1785994 (-) Length   264 a.a.
NCBI ID   WP_038428646.1    Uniprot ID   -
Organism   Bacillus subtilis strain R31     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1780200..1790994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS09520 (GO004_09500) ephM 1781049..1781909 (-) 861 WP_029726839.1 epoxide hydrolase EphM -
  GO004_RS09525 (GO004_09505) spdL 1781911..1782228 (-) 318 WP_032679045.1 SdpC immunity protein SpdL -
  GO004_RS09530 (GO004_09510) yfhK 1782313..1782824 (-) 512 Protein_1895 SH3 domain-containing protein -
  GO004_RS09535 (GO004_09515) yfhJ 1782969..1783238 (-) 270 WP_003243789.1 YfhJ family protein -
  GO004_RS09540 (GO004_09520) sspK 1783363..1783515 (+) 153 WP_003223241.1 small, acid-soluble spore protein K -
  GO004_RS09545 (GO004_09525) yfhI 1783547..1784740 (-) 1194 WP_003243500.1 MFS transporter -
  GO004_RS09550 (GO004_09530) yfhH 1784884..1785198 (-) 315 WP_038428648.1 YfhH family protein -
  GO004_RS09555 (GO004_09535) recX 1785200..1785994 (-) 795 WP_038428646.1 recombination regulator RecX Regulator
  GO004_RS09560 (GO004_09540) yfhF 1786083..1786994 (+) 912 WP_195727898.1 TIGR01777 family oxidoreductase -
  GO004_RS09565 (GO004_09545) yfhE 1787049..1787159 (+) 111 WP_003223230.1 YfhE family protein -
  GO004_RS09570 (GO004_09550) yfhD 1787226..1787417 (+) 192 WP_003233561.1 YfhD family protein -
  GO004_RS09575 (GO004_09555) yfhC 1787456..1788040 (-) 585 WP_003243940.1 nitroreductase -
  GO004_RS09580 (GO004_09560) yfhB 1788128..1789009 (-) 882 WP_003242763.1 PhzF family phenazine biosynthesis protein -
  GO004_RS09585 (GO004_09565) sxzA 1789124..1790155 (-) 1032 WP_003233568.1 iron ABC transporter permease -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31029.23 Da        Isoelectric Point: 6.6686

>NTDB_id=405798 GO004_RS09555 WP_038428646.1 1785200..1785994(-) (recX) [Bacillus subtilis strain R31]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFASAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=405798 GO004_RS09555 WP_038428646.1 1785200..1785994(-) (recX) [Bacillus subtilis strain R31]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCTCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAGGATCAGACAAGGGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAACTTTCGACGAAAGAACTTAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996

Multiple sequence alignment