Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   GO004_RS08490 Genome accession   NZ_CP046591
Coordinates   1593956..1594534 (-) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain R31     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588956..1599534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS08455 (GO004_08435) lepB 1588962..1589468 (-) 507 WP_032721278.1 signal peptidase I -
  GO004_RS08460 (GO004_08440) yhjE 1589470..1590093 (-) 624 WP_010886465.1 VTT domain-containing protein -
  GO004_RS08465 (GO004_08445) - 1590245..1590607 (+) 363 WP_024571727.1 hypothetical protein -
  GO004_RS08470 (GO004_08450) yhjC 1590815..1591015 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  GO004_RS08475 (GO004_08455) yhjB 1591012..1592481 (+) 1470 WP_032721274.1 sodium:solute symporter -
  GO004_RS08480 (GO004_08460) yhjA 1592524..1592793 (-) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  GO004_RS08485 (GO004_08465) yhxD 1593010..1593909 (+) 900 WP_032721273.1 SDR family oxidoreductase -
  GO004_RS08490 (GO004_08470) comK 1593956..1594534 (-) 579 WP_029317573.1 competence transcription factor ComK Regulator
  GO004_RS08495 (GO004_08475) yhzC 1594827..1595060 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  GO004_RS08500 (GO004_08480) yhxC 1595088..1595945 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  GO004_RS08505 (GO004_08485) comW 1596057..1597586 (+) 1530 WP_019712353.1 FAD-dependent oxidoreductase -
  GO004_RS08510 (GO004_08490) hemAT 1597725..1599023 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=405793 GO004_RS08490 WP_029317573.1 1593956..1594534(-) (comK) [Bacillus subtilis strain R31]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=405793 GO004_RS08490 WP_029317573.1 1593956..1594534(-) (comK) [Bacillus subtilis strain R31]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment