Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   GO004_RS06550 Genome accession   NZ_CP046591
Coordinates   1234714..1235178 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain R31     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229714..1240178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS06530 (GO004_06500) fadH 1230902..1231666 (-) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -
  GO004_RS06535 (GO004_06505) ppeE 1231809..1232669 (+) 861 WP_003232400.1 metallophosphoesterase -
  GO004_RS06540 (GO004_06510) ltdD 1232726..1233220 (+) 495 WP_072174092.1 L,D-transpeptidase family protein -
  GO004_RS06545 (GO004_06515) ykuC 1233296..1234588 (+) 1293 WP_195727871.1 MFS transporter -
  GO004_RS06550 (GO004_06520) kre 1234714..1235178 (+) 465 WP_003232406.1 YkyB family protein Regulator
  GO004_RS06555 (GO004_06525) cheV 1235222..1236133 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  GO004_RS06560 (GO004_06530) - 1236337..1236498 (+) 162 WP_003245246.1 hypothetical protein -
  GO004_RS06565 (GO004_06535) dapX 1236700..1237881 (+) 1182 WP_014476653.1 aminotransferase A -
  GO004_RS06570 (GO004_06540) kinA 1237891..1239711 (-) 1821 WP_015715804.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=405781 GO004_RS06550 WP_003232406.1 1234714..1235178(+) (kre) [Bacillus subtilis strain R31]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=405781 GO004_RS06550 WP_003232406.1 1234714..1235178(+) (kre) [Bacillus subtilis strain R31]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment