Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GO004_RS02415 Genome accession   NZ_CP046591
Coordinates   412465..413085 (-) Length   206 a.a.
NCBI ID   WP_015714153.1    Uniprot ID   A0A8E0VT51
Organism   Bacillus subtilis strain R31     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 407465..418085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS02395 (GO004_02380) dnaD 407756..408454 (+) 699 WP_015714155.1 DNA replication protein DnaD -
  GO004_RS02400 (GO004_02385) nth 408473..409132 (+) 660 WP_009967580.1 endonuclease III -
  GO004_RS02405 (GO004_02390) ypoC 409129..409623 (+) 495 WP_015714154.1 YpoC family protein -
  GO004_RS02410 (GO004_02395) ponA 409699..412443 (-) 2745 WP_088467250.1 PBP1A family penicillin-binding protein -
  GO004_RS02415 (GO004_02400) recU 412465..413085 (-) 621 WP_015714153.1 Holliday junction resolvase RecU Machinery gene
  GO004_RS02420 (GO004_02405) yppC 413126..414088 (+) 963 WP_015383945.1 DUF2515 domain-containing protein -
  GO004_RS02425 (GO004_02410) sspM 414113..414217 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  GO004_RS02430 (GO004_02415) yppD 414416..414661 (+) 246 WP_004398488.1 YppD family protein -
  GO004_RS02435 (GO004_02420) yppE 414707..415078 (+) 372 WP_195727830.1 YppE family protein -
  GO004_RS02440 (GO004_02425) yppF 415117..415305 (-) 189 WP_140599951.1 YppF family protein -
  GO004_RS02445 (GO004_02430) sppG 415493..415870 (+) 378 WP_004398696.1 YppG family protein -
  GO004_RS02450 (GO004_02435) ypqA 415891..416310 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  GO004_RS02455 (GO004_02440) ptsA 416448..416954 (+) 507 WP_009967573.1 glucose PTS transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23915.08 Da        Isoelectric Point: 9.7224

>NTDB_id=405774 GO004_RS02415 WP_015714153.1 412465..413085(-) (recU) [Bacillus subtilis strain R31]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHAHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=405774 GO004_RS02415 WP_015714153.1 412465..413085(-) (recU) [Bacillus subtilis strain R31]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGCCCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment