Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   GO004_RS01410 Genome accession   NZ_CP046591
Coordinates   232994..233797 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain R31     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 227994..238797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS01390 (GO004_01380) yqxC 228105..228950 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  GO004_RS01395 (GO004_01385) argR 229048..229497 (+) 450 WP_003230265.1 arginine repressor ArgR -
  GO004_RS01400 (GO004_01390) recN 229534..231264 (+) 1731 WP_015714238.1 DNA repair protein RecN Machinery gene
  GO004_RS01405 (GO004_01395) spoIVB 231438..232718 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  GO004_RS01410 (GO004_01400) spo0A 232994..233797 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  GO004_RS01415 (GO004_01405) yqiG 234262..235380 (-) 1119 WP_015714237.1 NADH-dependent flavin oxidoreductase -
  GO004_RS01420 (GO004_01410) - 235453..235605 (-) 153 WP_014480226.1 hypothetical protein -
  GO004_RS01425 (GO004_01415) yqiH 235913..236206 (+) 294 WP_003230284.1 lipoprotein -
  GO004_RS01430 (GO004_01420) yqiI 236221..236841 (+) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  GO004_RS01435 (GO004_01425) glpQB 236920..237651 (+) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=405773 GO004_RS01410 WP_003226427.1 232994..233797(+) (spo0A) [Bacillus subtilis strain R31]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=405773 GO004_RS01410 WP_003226427.1 232994..233797(+) (spo0A) [Bacillus subtilis strain R31]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATTTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATCGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment