Detailed information NTG0405746

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HYE75_RS05925
• Genome accession: NZ_CP058596
• Coordinates: 1237490..1238482 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain UPEC_U013
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1232490..1243482

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HYE75_RS05895 (HYE75_05890)	ispD	1232551..1233261 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HYE75_RS05900 (HYE75_05895)	ispF	1233261..1233740 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HYE75_RS05905 (HYE75_05900)	truD	1233737..1234786 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
HYE75_RS05910 (HYE75_05905)	surE	1234767..1235528 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HYE75_RS05915 (HYE75_05910)	pcm	1235522..1236148 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HYE75_RS05920 (HYE75_05915)	nlpD	1236333..1237427 (+)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
HYE75_RS05925 (HYE75_05920)	rpoS	1237490..1238482 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HYE75_RS05930 (HYE75_05925)	-	1238660..1239211 (-)	552	WP_001179443.1	flavodoxin family protein	-
HYE75_RS05935 (HYE75_05930)	-	1239436..1240479 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
HYE75_RS05940 (HYE75_05935)	ygbN	1240622..1241986 (-)	1365	WP_000104433.1	GntP family transporter	-
HYE75_RS05945 (HYE75_05940)	ygbM	1242075..1242851 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=405746 HYE75_RS05925 WP_000081550.1 1237490..1238482(+) (rpoS) [Escherichia coli strain UPEC_U013]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=405746 HYE75_RS05925 WP_000081550.1 1237490..1238482(+) (rpoS) [Escherichia coli strain UPEC_U013]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715