Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GOY09_RS07120 Genome accession   NZ_CP046590
Coordinates   1372127..1373488 (+) Length   453 a.a.
NCBI ID   WP_086043531.1    Uniprot ID   A0A1W7AEG9
Organism   Macrococcoides canis strain LI021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1367127..1378488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOY09_RS07100 (GOY09_07080) - 1367654..1368115 (+) 462 WP_086043535.1 CtsR family transcriptional regulator -
  GOY09_RS07105 (GOY09_07085) - 1368126..1368512 (+) 387 WP_158290763.1 UvrB/UvrC motif-containing protein -
  GOY09_RS07110 (GOY09_07090) - 1368502..1369506 (+) 1005 WP_211552444.1 protein arginine kinase -
  GOY09_RS07115 (GOY09_07095) - 1369516..1371942 (+) 2427 WP_211554713.1 ATP-dependent Clp protease ATP-binding subunit -
  GOY09_RS07120 (GOY09_07100) radA 1372127..1373488 (+) 1362 WP_086043531.1 DNA repair protein RadA Machinery gene
  GOY09_RS07125 (GOY09_07105) - 1373501..1374550 (+) 1050 WP_211552445.1 PIN/TRAM domain-containing protein -
  GOY09_RS07130 (GOY09_07110) ispD 1374543..1375223 (+) 681 WP_211552446.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GOY09_RS07135 (GOY09_07115) ispF 1375220..1375699 (+) 480 WP_211552447.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GOY09_RS07140 (GOY09_07120) gltX 1375714..1377171 (+) 1458 WP_211554714.1 glutamate--tRNA ligase -
  GOY09_RS07145 (GOY09_07125) cysE 1377446..1378063 (+) 618 WP_414739137.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50181.81 Da        Isoelectric Point: 7.2378

>NTDB_id=405742 GOY09_RS07120 WP_086043531.1 1372127..1373488(+) (radA) [Macrococcoides canis strain LI021]
MAKVKSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKQKGPKNAISESQSDNKVEKLKDITKESVPRDHTQMKELDR
VLGGGIVPGSLILIGGDPGIGKSTLLLQVCAMLSQNHPVLYISGEESVRQTKLRADRLLEDAGELDVYAETNLQIIHETV
KKTKPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
THHSYRILRAVKNRFGSTNEMGIFEMKNTGLKEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQSLVTPTSFHNP
RRMASGVDHNRLSLLMAVLEKKQGYLLQQQDAYVKVAGGVKLDEPAVDLSVIVSIASSYNDKPTRGDDCFIGEVGLTGEV
RRVARIEQRVQEAEKLGFKRVIIPKNNIGGWDFPGNIEVIGVTNINEALKIAF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=405742 GOY09_RS07120 WP_086043531.1 1372127..1373488(+) (radA) [Macrococcoides canis strain LI021]
TTGGCAAAGGTTAAAAGTACATTTGAATGTATGGCCTGTGGTTATCAGTCACCGAAATGGATGGGGAAATGTCCAAATTG
TGGTGCATGGAATCAGATGGAAGAAGTTATTGAACATAAACAGAAAGGCCCTAAAAATGCGATTTCTGAATCACAAAGTG
ATAATAAAGTTGAAAAGTTAAAAGATATAACAAAAGAAAGTGTCCCTCGTGATCATACACAGATGAAAGAACTGGATCGT
GTACTTGGAGGAGGAATTGTCCCGGGTTCATTAATACTTATCGGAGGAGACCCTGGAATTGGGAAATCTACATTGCTGCT
GCAAGTTTGTGCAATGCTTTCTCAAAACCATCCTGTACTTTATATTTCCGGAGAGGAATCCGTAAGACAGACAAAACTAC
GAGCCGATCGTCTTTTAGAGGATGCAGGTGAGCTTGATGTCTATGCAGAAACAAACCTTCAAATTATACACGAAACGGTA
AAGAAAACAAAACCGAAATTTTTAGTTATCGATTCAATTCAAACGATATTTCATCCAGAAGTTACGAGTGCACCTGGTTC
TGTATCCCAAGTTAGAGAATGTACTCAAGAATTAATGCGTATCGCAAAGCAGATGAATATCGCCACATTTATCGTAGGAC
ATGTGACAAAAGAGGGTCAGATTGCAGGTCCAAGATTACTTGAACATATGGTTGATACTGTCCTTTACTTTGAAGGAGAT
ACACATCACAGCTACAGAATATTACGTGCAGTGAAGAATCGTTTTGGTTCAACAAACGAAATGGGTATATTTGAAATGAA
GAATACAGGTCTTAAAGAAGTTCTGAATCCTTCAGAAATGTTCCTTGAAGAACGTACAAAAAATGTAGCGGGTTCGACTA
TTGTTGCAACGATGGAAGGTACGCGACCATTATTGGTTGAAGTTCAGTCGCTTGTAACGCCGACATCCTTTCACAATCCA
AGAAGGATGGCGTCAGGTGTCGATCATAATCGACTAAGTTTACTGATGGCTGTATTGGAGAAAAAACAAGGTTATTTATT
ACAGCAGCAAGATGCATACGTGAAAGTCGCGGGCGGAGTGAAACTTGATGAACCTGCTGTTGATTTAAGTGTTATCGTAA
GTATTGCATCAAGTTATAATGATAAGCCGACACGTGGAGATGACTGCTTTATCGGAGAGGTCGGTCTGACAGGTGAGGTA
AGACGTGTTGCACGTATAGAACAGCGCGTACAAGAGGCTGAGAAGCTCGGTTTTAAACGTGTGATCATCCCTAAAAATAA
TATTGGTGGATGGGATTTCCCAGGAAATATCGAAGTCATTGGTGTAACAAATATAAATGAAGCATTGAAAATTGCATTTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

AAA domain (AAA_25)

(66-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W7AEG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.671
  radA Streptococcus pneumoniae Rx1

62.996

100

0.631
  radA Streptococcus pneumoniae D39

62.996

100

0.631
  radA Streptococcus pneumoniae R6

62.996

100

0.631
  radA Streptococcus pneumoniae TIGR4

62.996

100

0.631
  radA Streptococcus mitis NCTC 12261

62.996

100

0.631
  radA Streptococcus mitis SK321

62.996

100

0.631

Multiple sequence alignment