Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HYH05_RS09280 Genome accession   NZ_CP058574
Coordinates   1945821..1947248 (-) Length   475 a.a.
NCBI ID   WP_001546874.1    Uniprot ID   -
Organism   Escherichia coli strain EC1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1940821..1952248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYH05_RS09250 (HYH05_09250) yeeZ 1940876..1941700 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HYH05_RS09255 (HYH05_09255) yeeY 1941746..1942675 (+) 930 WP_019842103.1 LysR substrate-binding domain-containing protein -
  HYH05_RS09260 (HYH05_09260) yoeI 1942890..1942952 (+) 63 WP_010723108.1 membrane protein YoeI -
  HYH05_RS09265 (HYH05_09265) plaP 1942942..1944300 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HYH05_RS09270 (HYH05_09270) tsuA 1944479..1945537 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  HYH05_RS09275 (HYH05_09275) tsuB 1945551..1945778 (+) 228 WP_001546876.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HYH05_RS09280 (HYH05_09280) sbcB 1945821..1947248 (-) 1428 WP_001546874.1 exodeoxyribonuclease I Machinery gene
  HYH05_RS09285 (HYH05_09285) dacD 1947457..1948623 (+) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HYH05_RS09290 (HYH05_09290) sbmC 1948742..1949215 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  HYH05_RS09295 (HYH05_09295) yeeA 1949413..1950471 (+) 1059 WP_001200891.1 FUSC family protein -
  HYH05_RS09300 (HYH05_09300) tmaR 1950643..1950972 (+) 330 WP_000450409.1 DUF496 family protein -
  HYH05_RS09305 (HYH05_09305) - 1951073..1951255 (-) 183 WP_032140263.1 EutP/PduV family microcompartment system protein -
  HYH05_RS09310 (HYH05_09310) - 1951327..1951455 (+) 129 Protein_1851 transposase domain-containing protein -
  HYH05_RS09315 (HYH05_09315) - 1951744..1951836 (-) 93 Protein_1852 DUF957 domain-containing protein -
  HYH05_RS09320 (HYH05_09320) yeeW 1951870..1952064 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54325.58 Da        Isoelectric Point: 5.3435

>NTDB_id=405672 HYH05_RS09280 WP_001546874.1 1945821..1947248(-) (sbcB) [Escherichia coli strain EC1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWS
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPELLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=405672 HYH05_RS09280 WP_001546874.1 1945821..1947248(-) (sbcB) [Escherichia coli strain EC1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGAGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCAGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTATTGCAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581