Detailed information NTG0040563

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: SSUJS14_RS01955
• Genome accession: NC_017618
• Coordinates: 374463..376562 (+)
• Length: 699 a.a.
• NCBI ID: WP_012774978.1
• Uniprot ID: -
• Organism: Streptococcus suis JS14
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 369463..381562

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSUJS14_RS01940 (SSUJS14_0358)	-	372745..373344 (+)	600	WP_012774975.1	HNH/ENDO VII family nuclease	-
SSUJS14_RS01945 (SSUJS14_0359)	-	373341..373751 (+)	411	WP_012774976.1	SMI1/KNR4 family protein	-
SSUJS14_RS01950 (SSUJS14_0360)	-	373748..374158 (+)	411	WP_012774977.1	peptide deformylase	-
SSUJS14_RS01955 (SSUJS14_0361)	clpC	374463..376562 (+)	2100	WP_012774978.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
SSUJS14_RS01960 (SSUJS14_0362)	malQ	376745..378253 (+)	1509	WP_011922661.1	4-alpha-glucanotransferase	-
SSUJS14_RS01965 (SSUJS14_0363)	glgP	378246..380510 (+)	2265	WP_012774979.1	glycogen/starch/alpha-glucan family phosphorylase	-
SSUJS14_RS01970 (SSUJS14_0364)	-	380738..381445 (-)	708	WP_004194205.1	UTRA domain-containing protein	-

Sequence

Protein

• Length: 699 a.a.
• Molecular weight: 77294.17 Da
• Isoelectric Point: 4.8273

>NTDB_id=40563 SSUJS14_RS01955 WP_012774978.1 374463..376562(+) (clpC) [Streptococcus suis JS14]
MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEFAMYRQTGRLPQTEEVAQTQAKGQIKSDGILAKLGRN
LTQDAREGKLDPVIGRNKEIQETSEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQH
PVTDIQTLEAEMAEAKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDNHTEQQKVVATVNDVAQAVERMTGIPVSQMGASD
IERLKELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKDAIIRLDMS
EYSDRTAVSKLIGTTAGYIGYDDNSHTLTERVRRNPYSIVLMDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTII
IATSNAGFGYGMAEGEENQDIMDRIAPFFRPEFLNRFNAVIEFKHLDKDDLKAIVELLLAQVNNTLAKKGIQLTVTEAAK
EFLMEEGYDKAMGARPLRRVIENQIRDKVTDFYLDHVDVKYLEADVVDGSIQIKEQSFA

Nucleotide

• Length: 2100 bp

>NTDB_id=40563 SSUJS14_RS01955 WP_012774978.1 374463..376562(+) (clpC) [Streptococcus suis JS14]
ATGAACAACAATTTCAATAACTTTAACAATATGGACGACATTTTCAATCAACTCATGGGCAACATGGGTGGCTACAGCAC
AGAACGTCGCCGTTATTCTATCAATGGGCGTGAAGTGACACCAGAAGAATTTGCTATGTACCGTCAGACTGGTCGCCTGC
CACAGACAGAAGAAGTGGCTCAAACACAGGCTAAAGGTCAGATAAAGTCAGACGGAATTCTTGCAAAACTTGGTCGCAAT
TTGACACAAGATGCGCGTGAAGGTAAGTTGGATCCAGTCATTGGACGAAACAAGGAAATCCAAGAAACCTCTGAAATCCT
AGCTCGCCGTACGAAAAATAATCCTGTTTTGGTCGGTGATGCTGGTGTCGGAAAGACAGCGGTAGTAGAAGGATTGGCTC
AAGCCATTGTCAATGGTGATGTGCCAGCAGCCATTAAGAACAAGGAAATCATCTCCATCGACATTTCAGGCTTGGAGGCT
GGGACTCAGTATCGTGGAGCTTTTGAGGAAAATGTGCAGAATCTTGTGGATGAAGTCAAAAAAGCTGGAAATATCATTCT
CTTCTTTGATGAAATTCATCAGATTTTGGGAGCTGGTAGCACTGGCGGAGACTCAGGTTCCAAGGGTTTAGCGGATATTC
TCAAACCAGCTTTATCCCGTGGGGAATTGACGGTTATCGGTGCCACTACACAGGACGAATACCGCAATACTATTCACAAG
AATGCTGCTCTGGCTCGTCGTTTCAATGAAGTCAAGGTCAATGCTCCGTCCGCAGAGGACACCTACCAGATTTTGAAAGG
GATTAAGCCGCTTTATGAAGCCCACCACAATATTGAATTGCCAGATGAGGTTTTGAGAGCTGCGGTTGATTATTCCGTCC
AATATATTCCACAACGTAGCTTGCCTGATAAGGCTATTGACCTAGTCGATGTGACCGCTGCACATTTGGCTGCACAACAT
CCTGTGACAGATATTCAGACCTTAGAAGCAGAAATGGCTGAGGCAAAACAGTTGCAGTTGGAAGCAGCTGAAAAAGAGGA
TTATGAAAAAGCCTTGAATGAAAAAGTCCGTATTGATAAGCTACAAAAACAGATTGATAATCATACGGAGCAACAGAAAG
TGGTGGCGACTGTTAATGATGTGGCTCAGGCGGTTGAGCGGATGACAGGAATTCCAGTCTCTCAAATGGGAGCTTCTGAC
ATTGAACGACTCAAGGAATTGAAAAATCGTCTGGCAGCAAACGTTATCGGTCAAGACGATGCGGTGGAAGCTGTATCTCG
TGCCATTCGTCGGAATCGTGCAGGTTTTGATGATGGCAACCGTCCAATTGGTTCCTTCCTCTTTGTTGGTCCGACAGGTG
TGGGTAAGACAGAGTTGGCAAAACAGTTAGCACTAGACTTGTTTGGTAACAAGGATGCCATTATTCGTTTGGATATGTCT
GAATACAGCGATCGGACAGCCGTTTCCAAATTAATCGGTACCACAGCTGGCTACATTGGCTACGATGACAATTCCCATAC
TCTTACCGAGCGCGTCCGCCGCAATCCGTACTCAATCGTTCTTATGGATGAGATTGAAAAAGCTGATCCACAAGTGATTA
CCCTTCTCTTGCAAGTGCTAGATGATGGGCATTTGACTGATGGACAGGGCAACCAAGTTAACTTTAAAAATACCATTATT
ATCGCGACTTCTAATGCAGGTTTTGGTTATGGAATGGCAGAAGGTGAAGAAAATCAAGACATCATGGACCGCATCGCACC
ATTCTTCCGCCCAGAGTTTCTCAATCGTTTTAACGCAGTCATCGAGTTCAAGCATTTGGATAAAGATGATCTCAAAGCCA
TTGTAGAATTACTCTTGGCCCAGGTCAATAATACCCTGGCGAAGAAAGGCATCCAATTAACGGTAACGGAAGCTGCCAAA
GAATTCTTGATGGAAGAAGGCTATGACAAGGCCATGGGAGCCCGTCCTCTGCGCCGTGTGATTGAAAATCAGATTCGTGA
TAAGGTGACGGATTTCTATTTGGATCATGTTGATGTCAAATATCTGGAAGCGGATGTGGTTGATGGAAGCATCCAAATAA
AAGAGCAAAGCTTTGCTTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (606-676)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-249)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

• AAA lid domain (AAA_lid_9) (257-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.376	100	0.478
clpE	Streptococcus mutans UA159	49.766	91.702	0.456
clpE	Streptococcus pneumoniae Rx1	49.534	92.132	0.456
clpE	Streptococcus pneumoniae D39	49.534	92.132	0.456
clpE	Streptococcus pneumoniae R6	49.534	92.132	0.456
clpE	Streptococcus pneumoniae TIGR4	49.534	92.132	0.456
clpC	Bacillus subtilis subsp. subtilis str. 168	44.427	92.418	0.411
clpC	Streptococcus pneumoniae Rx1	41.617	95.565	0.398
clpC	Streptococcus pneumoniae D39	41.617	95.565	0.398
clpC	Streptococcus pneumoniae TIGR4	41.379	95.422	0.395
clpC	Streptococcus mutans UA159	43.366	88.412	0.383
clpC	Streptococcus thermophilus LMD-9	42.72	89.413	0.382
clpC	Streptococcus thermophilus LMG 18311	42.56	89.413	0.381
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.673	88.841	0.379