Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GLV81_RS01370 Genome accession   NZ_CP046566
Coordinates   334381..335754 (-) Length   457 a.a.
NCBI ID   WP_157476160.1    Uniprot ID   A0A6I6G2R2
Organism   Phnomibacter ginsenosidimutans strain SB-02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 329381..340754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLV81_RS01350 (GLV81_01350) - 330178..331410 (-) 1233 WP_157480634.1 hypothetical protein -
  GLV81_RS01355 (GLV81_01355) - 331551..332081 (-) 531 WP_157476154.1 glutathione peroxidase -
  GLV81_RS01360 (GLV81_01360) - 332138..333583 (-) 1446 WP_157476156.1 choice-of-anchor Q domain-containing protein -
  GLV81_RS01365 (GLV81_01365) - 333628..334326 (-) 699 WP_157476158.1 phosphoribosyltransferase family protein -
  GLV81_RS01370 (GLV81_01370) radA 334381..335754 (-) 1374 WP_157476160.1 DNA repair protein RadA Machinery gene
  GLV81_RS01375 (GLV81_01375) - 336168..336857 (+) 690 WP_157476162.1 zinc metallopeptidase -
  GLV81_RS01380 (GLV81_01380) - 337258..340353 (+) 3096 WP_157476164.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50019.33 Da        Isoelectric Point: 6.5041

>NTDB_id=405594 GLV81_RS01370 WP_157476160.1 334381..335754(-) (radA) [Phnomibacter ginsenosidimutans strain SB-02]
MSKIKTAFFCNKCGYESAKWSGKCPSCGEWNTFTQEVIHKETKGGKAAPWQADDAPTPGKKTVLIQDVNASQQPRFSTGD
AEMDRVLGGGIVPGSVVLVAGEPGIGKSTLFLQLGLQMNDVTTLYISGEESQQQIKMRADRLKATPNDFYLLTETNTQTI
FSEIKKLKPQLLIVDSIQTLESPYIDSAAGSISQIKECAAELQRFAKETNTPVFLIGHITKDGNIAGPKILEHMVDTVLQ
FEGDRHYTYRILRTLKNRFGSTAELGIYEMTDLGMRAVSNPSEILISQKEHHLSGSAIAATMEGMRPLLIEVQALVTQSV
YGTPQRTVSGFDLRRLQLLLAVLEKRGGFQFGMKDVFLNIAGGLRVEDPSIDLAVVVALLSSYDDTAVPTNVCFAGEVGL
NGEVRAVNRVDQRIAEAARLGFDKIFISRFHTKGLGKHADIEVVPVAGVDEVYRALF

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=405594 GLV81_RS01370 WP_157476160.1 334381..335754(-) (radA) [Phnomibacter ginsenosidimutans strain SB-02]
ATGAGTAAAATAAAGACGGCTTTTTTCTGTAATAAATGTGGTTATGAAAGTGCCAAATGGTCGGGCAAATGCCCTTCTTG
CGGCGAGTGGAATACGTTTACTCAAGAAGTGATTCACAAAGAAACCAAGGGCGGAAAAGCAGCTCCCTGGCAAGCAGATG
ATGCACCCACCCCGGGCAAAAAAACTGTTTTGATTCAGGATGTAAATGCCAGCCAGCAACCGCGTTTTTCTACCGGCGAT
GCCGAAATGGATCGGGTGCTTGGTGGCGGCATAGTGCCGGGCAGCGTGGTGCTGGTAGCCGGCGAACCGGGCATTGGGAA
AAGCACCTTGTTTTTACAACTCGGTTTGCAAATGAATGATGTAACCACCCTTTACATTAGTGGTGAAGAAAGCCAGCAAC
AAATTAAAATGCGGGCCGACAGACTCAAAGCAACGCCCAACGATTTTTACCTGCTCACCGAAACCAACACGCAAACCATT
TTCAGTGAAATAAAAAAGCTGAAACCACAACTGCTCATTGTTGATTCAATTCAAACTTTAGAGTCGCCGTACATTGATAG
TGCAGCAGGAAGTATTAGCCAGATAAAAGAATGTGCAGCGGAGTTGCAGCGCTTTGCCAAAGAAACCAACACGCCTGTTT
TTCTCATTGGTCACATTACAAAAGACGGCAACATTGCCGGCCCGAAAATTTTGGAGCACATGGTAGATACCGTGCTGCAG
TTTGAAGGTGACCGTCATTATACATATCGCATTTTACGCACCCTCAAAAACCGATTTGGTTCTACTGCCGAACTAGGTAT
TTATGAAATGACCGATTTGGGCATGCGGGCTGTGAGCAATCCTTCGGAAATTCTTATTTCACAAAAAGAACATCACCTGA
GTGGAAGTGCTATTGCTGCTACGATGGAAGGTATGCGCCCCTTATTGATAGAAGTGCAAGCACTGGTAACGCAAAGCGTA
TACGGGACACCGCAGCGAACCGTGAGTGGCTTTGATTTACGCCGTTTGCAATTGCTACTCGCTGTGTTGGAAAAAAGAGG
AGGTTTTCAATTTGGCATGAAAGACGTTTTCCTCAACATTGCCGGAGGTTTGCGGGTAGAAGATCCTTCTATCGATTTGG
CGGTGGTAGTAGCCCTGCTCAGTAGCTATGATGACACGGCAGTTCCGACCAACGTTTGCTTTGCCGGCGAGGTAGGATTG
AATGGTGAAGTTCGTGCTGTGAACCGCGTAGACCAACGCATTGCAGAAGCAGCCCGATTGGGTTTCGATAAAATTTTTAT
CAGTCGCTTTCATACCAAAGGATTGGGCAAACACGCTGACATAGAAGTAGTACCAGTAGCAGGGGTAGATGAAGTGTACC
GGGCTTTGTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-34)

AAA domain (AAA_25)

(85-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6G2R2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.02

100

0.492
  radA Streptococcus mitis SK321

48.253

100

0.484
  radA Streptococcus mitis NCTC 12261

48.253

100

0.484
  radA Streptococcus pneumoniae Rx1

48.253

100

0.484
  radA Streptococcus pneumoniae D39

48.253

100

0.484
  radA Streptococcus pneumoniae R6

48.253

100

0.484
  radA Streptococcus pneumoniae TIGR4

48.253

100

0.484

Multiple sequence alignment