Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HX136_RS09330 Genome accession   NZ_CP058571
Coordinates   1931532..1932959 (-) Length   475 a.a.
NCBI ID   WP_000980592.1    Uniprot ID   -
Organism   Escherichia coli strain EC2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1926532..1937959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX136_RS09300 (HX136_09300) yeeZ 1926587..1927411 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HX136_RS09305 (HX136_09305) yeeY 1927457..1928386 (+) 930 WP_032239902.1 LysR substrate-binding domain-containing protein -
  HX136_RS09310 (HX136_09310) yoeI 1928601..1928663 (+) 63 WP_010723108.1 membrane protein YoeI -
  HX136_RS09315 (HX136_09315) plaP 1928653..1930011 (+) 1359 WP_032270653.1 putrescine/proton symporter PlaP -
  HX136_RS09320 (HX136_09320) tsuA 1930190..1931248 (+) 1059 WP_032270652.1 thiosulfate utilization transporter TsuA/YeeE -
  HX136_RS09325 (HX136_09325) tsuB 1931262..1931489 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HX136_RS09330 (HX136_09330) sbcB 1931532..1932959 (-) 1428 WP_000980592.1 exodeoxyribonuclease I Machinery gene
  HX136_RS09335 (HX136_09335) dacD 1933167..1934333 (+) 1167 WP_000830173.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HX136_RS09340 (HX136_09340) sbmC 1934452..1934925 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  HX136_RS09345 (HX136_09345) yeeA 1935123..1936181 (+) 1059 WP_001200905.1 FUSC family protein -
  HX136_RS09350 (HX136_09350) tmaR 1936353..1936682 (+) 330 WP_000450409.1 DUF496 family protein -
  HX136_RS09355 (HX136_09355) - 1936783..1936965 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HX136_RS09360 (HX136_09360) - 1937019..1937165 (+) 147 Protein_1863 transposase domain-containing protein -
  HX136_RS09365 (HX136_09365) - 1937454..1937546 (-) 93 Protein_1864 DUF957 domain-containing protein -
  HX136_RS09370 (HX136_09370) yeeW 1937580..1937774 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54452.77 Da        Isoelectric Point: 5.4720

>NTDB_id=405591 HX136_RS09330 WP_000980592.1 1931532..1932959(-) (sbcB) [Escherichia coli strain EC2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=405591 HX136_RS09330 WP_000980592.1 1931532..1932959(-) (sbcB) [Escherichia coli strain EC2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583