Detailed information NTG0405578

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HX136_RS05250
• Genome accession: NZ_CP058571
• Coordinates: 1096389..1097381 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1091389..1102381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HX136_RS05220 (HX136_05220)	ispD	1091450..1092160 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HX136_RS05225 (HX136_05225)	ispF	1092160..1092639 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HX136_RS05230 (HX136_05230)	truD	1092636..1093685 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
HX136_RS05235 (HX136_05235)	surE	1093666..1094427 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HX136_RS05240 (HX136_05240)	pcm	1094421..1095047 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HX136_RS05245 (HX136_05245)	nlpD	1095232..1096326 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HX136_RS05250 (HX136_05250)	rpoS	1096389..1097381 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HX136_RS05255 (HX136_05255)	ygbN	1097475..1098839 (-)	1365	WP_000104441.1	GntP family transporter	-
HX136_RS05260 (HX136_05260)	ygbM	1098928..1099704 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
HX136_RS05265 (HX136_05265)	ygbL	1099709..1100347 (-)	639	WP_001278994.1	aldolase	-
HX136_RS05270 (HX136_05270)	otnK	1100344..1101606 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=405578 HX136_RS05250 WP_000081550.1 1096389..1097381(+) (rpoS) [Escherichia coli strain EC2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=405578 HX136_RS05250 WP_000081550.1 1096389..1097381(+) (rpoS) [Escherichia coli strain EC2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715