Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GNK04_RS13055 Genome accession   NZ_CP046564
Coordinates   2509501..2510103 (+) Length   200 a.a.
NCBI ID   WP_168212296.1    Uniprot ID   -
Organism   Bacillus sp. N1-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2504501..2515103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNK04_RS13020 (GNK04_13025) - 2505639..2505803 (-) 165 WP_159782805.1 hypothetical protein -
  GNK04_RS13025 (GNK04_13030) - 2505979..2506182 (+) 204 WP_098443926.1 alpha/beta-type small acid-soluble spore protein -
  GNK04_RS13030 (GNK04_13035) - 2506233..2506739 (-) 507 WP_159782806.1 hypothetical protein -
  GNK04_RS13035 (GNK04_13040) - 2506793..2507044 (-) 252 WP_098443928.1 DNA alkylation repair protein -
  GNK04_RS13040 (GNK04_13045) - 2507146..2507508 (-) 363 WP_159782807.1 YppE family protein -
  GNK04_RS13045 (GNK04_13050) - 2507617..2508114 (-) 498 WP_159782808.1 MerR family transcriptional regulator -
  GNK04_RS13050 (GNK04_13055) - 2508443..2509402 (-) 960 WP_240903929.1 DUF2515 family protein -
  GNK04_RS13055 (GNK04_13060) recU 2509501..2510103 (+) 603 WP_168212296.1 Holliday junction resolvase RecU Machinery gene
  GNK04_RS13060 (GNK04_13065) - 2510185..2512914 (+) 2730 WP_159782810.1 PBP1A family penicillin-binding protein -
  GNK04_RS13065 (GNK04_13070) nth 2512987..2513646 (-) 660 WP_159782811.1 endonuclease III -
  GNK04_RS13070 (GNK04_13075) - 2513738..2514454 (-) 717 WP_159782812.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23204.50 Da        Isoelectric Point: 9.7727

>NTDB_id=405549 GNK04_RS13055 WP_168212296.1 2509501..2510103(+) (recU) [Bacillus sp. N1-1]
MPIRYPNGKPYVPSAQNQLASQKQKSYSNRGMTLEEDINQSNTYYLSTGKAVIHKKPTPVQIVNVDYPKRSAAVIKEAYF
KQASTTDYNGVYKGKYIDFEAKETKNKTSFPLNNFHEHQISHMKQVHDHDGICFVLLRFSITDEVFLLNAVALFSHWQLM
KDGGRKSIKKEEIEKQGTHIPYTFQPRIDYLKIIDKMYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=405549 GNK04_RS13055 WP_168212296.1 2509501..2510103(+) (recU) [Bacillus sp. N1-1]
GTGCCGATTCGATATCCGAACGGAAAGCCGTACGTCCCTTCGGCTCAGAATCAGCTGGCAAGTCAAAAACAAAAGTCATA
TAGCAATCGAGGTATGACACTAGAAGAGGATATTAATCAGAGTAATACGTATTATCTCTCAACAGGTAAAGCCGTTATTC
ACAAAAAGCCTACGCCCGTCCAAATTGTTAATGTTGATTATCCAAAACGGAGTGCGGCTGTTATTAAAGAAGCTTACTTC
AAACAGGCTTCGACTACCGATTATAATGGAGTCTACAAAGGAAAATATATTGATTTTGAAGCCAAAGAAACGAAGAACAA
AACGTCCTTCCCTTTAAATAATTTTCATGAACATCAGATCAGTCATATGAAACAAGTACATGATCATGATGGAATTTGCT
TTGTCCTTCTCCGCTTTTCGATCACTGATGAGGTTTTTTTACTTAATGCAGTTGCTCTCTTTTCTCATTGGCAATTAATG
AAAGACGGCGGCAGGAAATCGATTAAGAAAGAAGAGATTGAAAAACAAGGAACACATATCCCATACACCTTTCAACCACG
CATTGACTATCTGAAAATTATTGATAAAATGTATTTCAGCTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

64

100

0.64

Multiple sequence alignment