Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GNK04_RS05390 Genome accession   NZ_CP046564
Coordinates   1016453..1017403 (+) Length   316 a.a.
NCBI ID   WP_159781533.1    Uniprot ID   A0A7Z2K420
Organism   Bacillus sp. N1-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1011453..1022403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNK04_RS05375 (GNK04_05375) dcuS 1011999..1013615 (-) 1617 WP_346764173.1 DcuS/MalK family sensor histidine kinase -
  GNK04_RS05380 (GNK04_05380) - 1013759..1015216 (-) 1458 WP_159781531.1 MDR family MFS transporter -
  GNK04_RS05385 (GNK04_05385) - 1015749..1016255 (+) 507 WP_159781532.1 GrpB family protein -
  GNK04_RS05390 (GNK04_05390) ceuB 1016453..1017403 (+) 951 WP_159781533.1 ABC transporter permease Machinery gene
  GNK04_RS05395 (GNK04_05395) - 1017396..1018343 (+) 948 WP_159781534.1 iron chelate uptake ABC transporter family permease subunit -
  GNK04_RS05400 (GNK04_05400) - 1018340..1019098 (+) 759 WP_159781535.1 ATP-binding cassette domain-containing protein -
  GNK04_RS05405 (GNK04_05405) - 1019238..1020197 (+) 960 WP_159781536.1 siderophore ABC transporter substrate-binding protein -
  GNK04_RS05410 (GNK04_05410) - 1020238..1021749 (-) 1512 WP_159781537.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34944.40 Da        Isoelectric Point: 10.0311

>NTDB_id=405536 GNK04_RS05390 WP_159781533.1 1016453..1017403(+) (ceuB) [Bacillus sp. N1-1]
MKKRYLISVFILLSFISLFIGVKSMSPLEVFKLTDEQSQVFWISRVPRLVSIIIAGASMSICGLIMQQLSRNKFVSPTTA
GTMDAARLGILVSLILFSSASLMQKMMISFLFALAGTFLFMKVLDRVKYKDAIFIPLVGLMFGNVIGSVTTFFAYKYDLM
QSIGSWLQGDFSVVLKGQYELLYISIPGLIIAYIYANRFTIAGMGEDFSVNLGLKYKQIVNIGLVIVALVTTVVMLTVGA
IPFLGLIIPNIVSIMMGDNLKANLFPTAMMGAVFVLICDILGRVIIYPYEISIGLMVGVIGSVLFIYLLLRRRAYV

Nucleotide


Download         Length: 951 bp        

>NTDB_id=405536 GNK04_RS05390 WP_159781533.1 1016453..1017403(+) (ceuB) [Bacillus sp. N1-1]
ATGAAAAAAAGGTATCTAATCAGTGTATTTATTTTATTATCATTTATATCCCTGTTTATCGGGGTGAAAAGCATGTCGCC
ACTCGAGGTGTTTAAGCTTACGGATGAACAGAGTCAGGTGTTTTGGATTAGCCGTGTTCCAAGACTCGTCAGTATTATTA
TCGCTGGGGCAAGTATGAGTATTTGTGGACTTATTATGCAGCAGCTTAGTCGAAACAAGTTTGTCTCTCCAACAACGGCA
GGTACGATGGATGCTGCAAGACTTGGGATTCTTGTTTCTCTTATTCTATTTTCCTCTGCTAGCTTAATGCAAAAGATGAT
GATTTCTTTTTTGTTTGCTTTAGCAGGTACTTTCCTTTTCATGAAGGTTCTCGACCGAGTGAAGTATAAGGATGCTATTT
TCATTCCTTTAGTTGGCTTGATGTTCGGGAATGTGATCGGATCAGTGACCACGTTTTTCGCATATAAATACGATTTAATG
CAGAGTATTGGATCGTGGCTGCAGGGAGATTTTTCTGTCGTATTAAAAGGTCAGTATGAATTGTTATACATAAGCATTCC
TGGTCTTATTATTGCTTACATATATGCAAACCGATTTACGATTGCAGGAATGGGGGAGGATTTTTCCGTTAATCTTGGCT
TAAAGTATAAACAGATTGTTAACATCGGGCTCGTTATCGTTGCTTTGGTGACAACCGTTGTCATGTTAACAGTAGGAGCC
ATTCCGTTTCTCGGTTTAATAATCCCTAATATCGTTTCGATCATGATGGGGGATAACCTGAAAGCTAATCTTTTTCCAAC
TGCCATGATGGGGGCTGTATTTGTGTTAATCTGCGATATCCTTGGAAGAGTGATTATTTATCCCTATGAGATATCCATTG
GTCTTATGGTCGGCGTCATTGGAAGTGTTTTATTTATTTACTTGTTGTTAAGGAGAAGAGCTTATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2K420

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.282

98.734

0.506

Multiple sequence alignment