Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   HXS80_RS19880 Genome accession   NZ_CP058556
Coordinates   4602024..4603436 (-) Length   470 a.a.
NCBI ID   WP_179182558.1    Uniprot ID   -
Organism   Streptomyces sp. CB04723     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4597024..4608436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS80_RS19860 (HXS80_19860) - 4597407..4598081 (-) 675 WP_030331584.1 SigE family RNA polymerase sigma factor -
  HXS80_RS19865 (HXS80_19865) - 4598438..4599355 (-) 918 WP_030193976.1 A/G-specific adenine glycosylase -
  HXS80_RS19870 (HXS80_19870) - 4599660..4600409 (+) 750 WP_179182557.1 hypothetical protein -
  HXS80_RS19875 (HXS80_19875) disA 4600819..4601943 (-) 1125 WP_030193970.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  HXS80_RS19880 (HXS80_19880) radA/sms 4602024..4603436 (-) 1413 WP_179182558.1 DNA repair protein RadA Machinery gene
  HXS80_RS19885 (HXS80_19885) - 4603788..4605770 (+) 1983 WP_179182559.1 hypothetical protein -
  HXS80_RS19890 (HXS80_19890) - 4606002..4606868 (-) 867 WP_030299573.1 hypothetical protein -
  HXS80_RS19895 (HXS80_19895) - 4606930..4607880 (+) 951 WP_030193962.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49311.42 Da        Isoelectric Point: 8.2584

>NTDB_id=405527 HXS80_RS19880 WP_179182558.1 4602024..4603436(-) (radA/sms) [Streptomyces sp. CB04723]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIKAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTALPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVADMGDALRVLPRRSRQEAPQEDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=405527 HXS80_RS19880 WP_179182558.1 4602024..4603436(-) (radA/sms) [Streptomyces sp. CB04723]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACCACCGCCAAGTGGCT
CGGTCGTTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGCACCACCGCCGCCG
GCCGGGTCTCCACGGCCGCGCTGCCGATCGGCCAGGTCGACAGCCGGACGGCGACCGCCCGCTCGACGGGCGTCGGCGAG
CTGGACCGGGTGCTGGGCGGCGGGCTCGTCCCGGGCGCGGTCGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGACCACCGCACGCTGTACGTGACCGCCGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGCGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCGGCGGAGACCGATCTGTCGGCGGTG
CTCGGCCACCTGGACGCGGTGAAGCCCTCGCTGCTGGTCCTGGACTCGGTGCAGACGGTCGCCTCGCCGGAGATCGACGG
CGCGCCCGGCGGGATGGCCCAGGTCCGGGAGGTCGCCGGGGCGCTGATCCGGGCGTCCAAGGAGCGCGGGATGGCGACGC
TGCTGGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGGGGCGTCAAGAACCGTTACGGCGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGACTCGCCGACCCCTCGGGCCTCTTCCTGACCCGCCGCGACGTGGCGGTGC
CGGGCACCTGCCTCACCGTGACGCTGGAGGGCAAGCGGCCCCTGGTGGCCGAGGTGCAGGCGCTGACCGTCGACTCTCAG
ATCCCCTCGCCCCGGCGCACCACCTCCGGCCTGGAGACTTCGCGGGTGTCGATGATGCTCGCCGTACTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGTGTGAAGCTCACCGAGCCCGCGGCCGACC
TGGCCGTCGCGCTCGCGCTGGCCAGCGCGGCCAGCGACACCGCCCTCCCGAAGAACCTGGTCGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGGCGGGTCACCGGGGTGCAGCGGAGGCTGGCCGAGGCGCACCGGCTGGGCTTCACCCACGCCCT
CGTCCCGACGGACCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGCGACGCTCTGCGGGTCC
TCCCGCGCCGCTCTCGCCAGGAGGCACCACAGGAGGACGGCGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.383

0.419
  radA Streptococcus pneumoniae Rx1

42.605

96.383

0.411
  radA Streptococcus pneumoniae D39

42.605

96.383

0.411
  radA Streptococcus pneumoniae R6

42.605

96.383

0.411
  radA Streptococcus pneumoniae TIGR4

42.605

96.383

0.411
  radA Streptococcus mitis SK321

44.056

91.277

0.402
  radA Streptococcus mitis NCTC 12261

44.056

91.277

0.402

Multiple sequence alignment