Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HXS80_RS17055 Genome accession   NZ_CP058556
Coordinates   3951565..3952695 (-) Length   376 a.a.
NCBI ID   WP_030120442.1    Uniprot ID   A0ABD7D060
Organism   Streptomyces sp. CB04723     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3946565..3957695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS80_RS17045 (HXS80_17045) gyrB 3948474..3950546 (-) 2073 WP_030189088.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HXS80_RS17050 (HXS80_17050) - 3950984..3951568 (-) 585 WP_235496681.1 DciA family protein -
  HXS80_RS17055 (HXS80_17055) recF 3951565..3952695 (-) 1131 WP_030120442.1 DNA replication/repair protein RecF Machinery gene
  HXS80_RS17060 (HXS80_17060) gnd 3952822..3953706 (-) 885 WP_179182229.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  HXS80_RS17065 (HXS80_17065) dnaN 3953869..3954999 (-) 1131 WP_030115122.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40809.45 Da        Isoelectric Point: 6.8623

>NTDB_id=405517 HXS80_RS17055 WP_030120442.1 3951565..3952695(-) (recF) [Streptomyces sp. CB04723]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLVELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVALEYRSSVGDDVG
PERTRDELYEQLLAALAGVRKQEIERGVTLVGPHRDDLLLGLRGMPAKGYASHGESWSYALALRLASFELLRSEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVAEDVPGVLAGTRYAVTAGEVERV

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=405517 HXS80_RS17055 WP_030120442.1 3951565..3952695(-) (recF) [Streptomyces sp. CB04723]
ATGCACGTCACCCACCTCTCGCTGGCCGATTTCCGCTCGTACGCCCGGGTCGAGGTCCCGCTCGACCCGGGCGTCACCGC
GTTCGTGGGCGCCAACGGACAGGGCAAGACCAACCTCGTCGAGGCCGTCGGGTACCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCCCCGCTCGTCCGGATGGGCGCGGAGCGGGCGGTGATCCGCGCGGCCGTGACCCAGGGCGAGCGTTCG
CAACTGGTCGAGCTGGAGCTGAACCCTGGCCGCGCGAACCGCGCCCGTATCAACCGGTCCTCGCAGGTCAGACCACGTGA
CGTGCTGGGCATCGTCCGGACGGTGCTGTTCGCGCCGGAGGATCTGGCGCTGGTCAAGGGCGATCCGGGCGAGCGGCGGC
GGTTCCTGGACGAGCTGGTCACCGCGCGCTCGCCGCGGATGGCCGGGGTCCGCTCCGACTACGAGCGGGTGCTGAAGCAG
CGCAACACCCTGCTGAAGTCCGCCGCGATGGCCCGGCGGCACGGCGGTCGCTCGATGGACCTGTCCACCCTGGACGTCTG
GGACCAGCACCTGGGCCGGGTCGGCGCCGAGCTGCTGGCGCAGCGGCTGGATCTGATCGCCACGCTCCAGCCGCTGGCCG
ACAAGGCGTACGGGGACGTCGCGCCGGGCGGCGGCCCGGTGGCGCTGGAGTACCGCAGCTCCGTGGGTGACGACGTGGGG
CCCGAGCGCACCCGCGACGAGCTGTACGAGCAGTTGCTCGCCGCGCTCGCCGGGGTCCGGAAGCAGGAGATCGAGCGGGG
TGTGACGCTGGTCGGCCCGCACCGCGACGATCTGCTGCTGGGGCTGCGCGGGATGCCGGCGAAGGGGTACGCGAGCCACG
GCGAGTCCTGGAGCTACGCGCTGGCGCTGCGGCTGGCCAGTTTCGAGCTGCTGCGGTCCGAGGGCAACGAGCCGGTGCTG
GTGCTGGACGACGTCTTCGCCGAGCTGGACGCCCGCCGCCGGGAGCGGCTGGCGGAGCTGGTGGCCCCGGGCGAGCAGGT
GCTGGTGACGGCCGCGGTGGCCGAGGACGTGCCGGGCGTGCTGGCGGGGACGCGGTACGCGGTGACCGCGGGCGAGGTGG
AGCGCGTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD7D060

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.808

97.074

0.367