Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HXS80_RS11190 Genome accession   NZ_CP058556
Coordinates   2651711..2652769 (-) Length   352 a.a.
NCBI ID   WP_098008043.1    Uniprot ID   -
Organism   Streptomyces sp. CB04723     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2646711..2657769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS80_RS11170 (HXS80_11170) - 2646745..2647722 (-) 978 WP_030112235.1 ABC transporter permease -
  HXS80_RS11175 (HXS80_11175) - 2647715..2648638 (-) 924 WP_030112234.1 ABC transporter permease -
  HXS80_RS11180 (HXS80_11180) - 2648777..2650411 (-) 1635 WP_030112233.1 ABC transporter substrate-binding protein -
  HXS80_RS11185 (HXS80_11185) - 2650576..2651718 (-) 1143 WP_179181571.1 ABC transporter ATP-binding protein -
  HXS80_RS11190 (HXS80_11190) amiE 2651711..2652769 (-) 1059 WP_098008043.1 ABC transporter ATP-binding protein Regulator
  HXS80_RS11195 (HXS80_11195) - 2652781..2653734 (-) 954 WP_179181572.1 ABC transporter permease -
  HXS80_RS11200 (HXS80_11200) - 2653727..2654656 (-) 930 WP_030112226.1 ABC transporter permease -
  HXS80_RS11205 (HXS80_11205) - 2654785..2656401 (-) 1617 WP_098008046.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38192.14 Da        Isoelectric Point: 6.5874

>NTDB_id=405509 HXS80_RS11190 WP_098008043.1 2651711..2652769(-) (amiE) [Streptomyces sp. CB04723]
MTTIDKTAHVPAPRESVSGDGPLLDVRDLHVEFHTRDGVAKAVNGVNYTVSAGETLAVLGESGSGKSVTAQTIMGILDMP
PGKITQGEILFRGQDMLKMSNEERRKIRGRKIAMIFQDALSSLNPVLTVGYQLGEMFRVHQGLSRKEAKAKAIELMDQVK
IPAAAARISDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVGELYSRPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLTRIPAGCAFSPRCPKAQDICRT
EVPPLAPVTEPDGAELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=405509 HXS80_RS11190 WP_098008043.1 2651711..2652769(-) (amiE) [Streptomyces sp. CB04723]
GTGACCACCATCGACAAGACGGCTCACGTTCCCGCACCGCGGGAGTCCGTGAGTGGCGACGGTCCACTGCTCGACGTCCG
TGACCTGCACGTGGAGTTCCACACCCGCGACGGTGTGGCCAAGGCGGTCAACGGTGTGAACTACACCGTCAGCGCCGGCG
AGACCCTCGCGGTGCTGGGCGAGTCCGGCTCCGGCAAGTCCGTGACCGCGCAGACCATCATGGGCATCCTCGACATGCCG
CCCGGGAAGATCACGCAGGGCGAGATCCTCTTCCGCGGCCAGGACATGCTGAAGATGTCCAACGAGGAGCGCCGGAAGAT
CCGCGGCCGCAAGATCGCGATGATCTTCCAGGACGCGCTGTCCTCGCTGAACCCGGTGCTCACCGTCGGCTACCAGCTCG
GCGAGATGTTCCGGGTCCACCAGGGCCTGTCCCGCAAGGAGGCCAAGGCCAAGGCCATCGAGCTGATGGACCAGGTCAAG
ATCCCCGCCGCCGCGGCCCGGATCTCGGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCAT
GGCGCTGGCCCTGGAGCCGGACCTGATCATCGCGGACGAGCCGACCACCGCGCTCGACGTGACGGTGCAGGCCCAGGTCA
TGGACCTGCTGGCCGAGCTGCAGCGCGAGTACAACATGGGTCTGATCCTGATCACCCACGACCTCGGCGTCGTCGCCGAC
GTGGCGGACAAGATCGCCGTGATGTACGCGGGGCGGATCGTGGAGACGGCCCCGGTCGGCGAGCTGTACAGCCGCCCGGC
CCACCCGTACACCAGGGGTCTGCTGGACTCCATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTGTACGCGATCAAGGGCC
TCCCGCCCAACCTGACGCGTATCCCCGCGGGCTGCGCCTTCAGCCCCCGCTGCCCCAAGGCACAGGACATCTGCCGTACC
GAGGTTCCGCCGCTCGCCCCGGTGACCGAGCCGGACGGCGCCGAGCTGGTCGGCCGCGGCAGCGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(44-202)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

50.955

89.205

0.455
  amiE Streptococcus thermophilus LMG 18311

50.318

89.205

0.449
  amiE Streptococcus thermophilus LMD-9

50.318

89.205

0.449
  oppD Streptococcus mutans UA159

48.701

87.5

0.426