Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HXS80_RS11165 Genome accession   NZ_CP058556
Coordinates   2645754..2646731 (-) Length   325 a.a.
NCBI ID   WP_179181570.1    Uniprot ID   -
Organism   Streptomyces sp. CB04723     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2640754..2651731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS80_RS11145 (HXS80_11145) mshB 2640835..2641737 (-) 903 WP_179181567.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -
  HXS80_RS11150 (HXS80_11150) - 2641855..2642049 (-) 195 WP_026290246.1 hypothetical protein -
  HXS80_RS11155 (HXS80_11155) - 2642218..2644344 (+) 2127 WP_179181568.1 prolyl oligopeptidase family serine peptidase -
  HXS80_RS11160 (HXS80_11160) - 2644499..2645764 (-) 1266 WP_179181569.1 ABC transporter ATP-binding protein -
  HXS80_RS11165 (HXS80_11165) amiE 2645754..2646731 (-) 978 WP_179181570.1 ABC transporter ATP-binding protein Regulator
  HXS80_RS11170 (HXS80_11170) - 2646745..2647722 (-) 978 WP_030112235.1 ABC transporter permease -
  HXS80_RS11175 (HXS80_11175) - 2647715..2648638 (-) 924 WP_030112234.1 ABC transporter permease -
  HXS80_RS11180 (HXS80_11180) - 2648777..2650411 (-) 1635 WP_030112233.1 ABC transporter substrate-binding protein -
  HXS80_RS11185 (HXS80_11185) - 2650576..2651718 (-) 1143 WP_179181571.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35927.78 Da        Isoelectric Point: 7.1504

>NTDB_id=405508 HXS80_RS11165 WP_179181570.1 2645754..2646731(-) (amiE) [Streptomyces sp. CB04723]
MLLEVRDLHVEFHTREGVAKAVNGVDYSVAEGETLAVLGESGSGKSVTAQAIMGILDMPPGKIAGGEILFKDQDLLKLKP
EERRRIRGQEMAMIFQDALSSLNPVLTVGQQLGEMFVVHRGMSRKDAKAKSVELMDRVRIPAAKERVNQYPHQFSGGMRQ
RIMIAMAMALEPSLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHE
IYQAPAHPYTKGLLRSIPRLDQKGRELYAIKGLPPNLTRIPPGCAFNPRCPIARDVCRTDVPPLYEVDAGRRSACHFWKE
TLDAR

Nucleotide


Download         Length: 978 bp        

>NTDB_id=405508 HXS80_RS11165 WP_179181570.1 2645754..2646731(-) (amiE) [Streptomyces sp. CB04723]
ATGTTGCTCGAAGTGCGCGATCTGCACGTGGAGTTCCACACCCGCGAAGGCGTCGCCAAGGCCGTCAACGGGGTCGACTA
CTCGGTGGCCGAGGGCGAGACCCTGGCCGTTCTCGGGGAGTCCGGCTCCGGCAAGTCCGTCACCGCCCAGGCGATCATGG
GCATCCTCGACATGCCGCCCGGGAAGATCGCCGGCGGGGAGATCCTCTTCAAGGACCAGGACCTGCTGAAGCTCAAGCCG
GAGGAGCGGCGCAGGATCCGGGGCCAGGAGATGGCCATGATCTTCCAGGACGCGCTCTCCTCGCTGAACCCGGTCCTCAC
CGTCGGCCAGCAGCTCGGCGAGATGTTCGTCGTGCACCGGGGGATGTCCCGCAAGGACGCGAAGGCCAAGTCCGTCGAGC
TGATGGACCGGGTCCGCATCCCGGCCGCCAAGGAGCGGGTCAACCAGTACCCGCACCAGTTCTCCGGCGGTATGCGCCAG
CGCATCATGATCGCCATGGCGATGGCGCTGGAACCGTCCCTGATCATCGCGGACGAGCCCACCACCGCCCTCGACGTCAC
CGTGCAGGCGCAGGTCATGGACCTGCTGGCCGAGCTCCAGCGCGAGTACAACATGGGGCTGATCCTGATCACCCACGACC
TCGGCGTCGTCGCCGACGTCGCCGACAAGATCGCCGTGATGTACGCGGGCCGCATCGTCGAGACGGCCCCCGTGCACGAG
ATCTACCAGGCCCCCGCCCACCCCTACACCAAGGGCCTCCTGCGGTCGATCCCGCGCCTGGACCAGAAGGGCCGGGAGCT
GTACGCGATCAAGGGCCTGCCGCCCAACCTCACCCGCATCCCGCCGGGCTGCGCGTTCAACCCCCGCTGCCCGATCGCGC
GGGACGTGTGCCGCACCGACGTGCCGCCGCTCTACGAGGTCGACGCCGGGCGCCGGAGCGCCTGCCACTTCTGGAAGGAG
ACGCTCGATGCACGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

48.297

99.385

0.48
  amiE Streptococcus thermophilus LMG 18311

47.368

99.385

0.471
  amiE Streptococcus thermophilus LMD-9

47.368

99.385

0.471
  oppD Streptococcus mutans UA159

46.815

96.615

0.452