Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GNG29_RS22260 Genome accession   NZ_CP046557
Coordinates   4654035..4655555 (+) Length   506 a.a.
NCBI ID   WP_156655364.1    Uniprot ID   -
Organism   Leclercia sp. Colony189 strain 1106151     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4649035..4660555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNG29_RS22240 (GNG29_22240) ilvE 4650596..4651525 (-) 930 WP_103177472.1 branched-chain-amino-acid transaminase -
  GNG29_RS22245 (GNG29_22245) ilvM 4651542..4651811 (-) 270 WP_103177473.1 acetolactate synthase 2 small subunit -
  GNG29_RS22250 (GNG29_22250) ilvG 4651808..4653454 (-) 1647 WP_156655363.1 acetolactate synthase 2 catalytic subunit -
  GNG29_RS23235 ilvX 4653457..4653507 (-) 51 WP_197090613.1 peptide IlvX -
  GNG29_RS22255 (GNG29_22255) ilvL 4653594..4653692 (-) 99 WP_001311244.1 ilv operon leader peptide -
  GNG29_RS22260 (GNG29_22260) comM 4654035..4655555 (+) 1521 WP_156655364.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GNG29_RS22265 (GNG29_22265) - 4655581..4655919 (-) 339 WP_039031246.1 DUF413 domain-containing protein -
  GNG29_RS22270 (GNG29_22270) hdfR 4656038..4656859 (+) 822 WP_156655365.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55141.44 Da        Isoelectric Point: 7.0536

>NTDB_id=405500 GNG29_RS22260 WP_156655364.1 4654035..4655555(+) (comM) [Leclercia sp. Colony189 strain 1106151]
MSLSVVYTRAALGVEAPLICVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLVASEQLSSSRISAYEFVGELALTGALRGVPGAISGALAAIRAGREIIVARDNAAEVSLIEEKGCLVAEHL
QEVCAFLEGCHELAAPVGEPFVAEHNECDISDIIGQEQGKRALEITAAGAHNLLLIGPPGTGKTMLASRLNTLLPPLSNH
EALESAAIVSLVSATSMYKQWRQRPFRAPHHSASLVAMVGGGAIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GQINIYRTRAKISYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGLLSQAHKTG
ESSLTVRNRVIAAQERQLARQKKRNAHLDNAEIRTFCRLAADDALWLEETLTHFGLSVRAWQRLLKVARTIADLEECENI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=405500 GNG29_RS22260 WP_156655364.1 4654035..4655555(+) (comM) [Leclercia sp. Colony189 strain 1106151]
ATGTCATTGTCGGTTGTCTATACCCGCGCTGCATTAGGCGTTGAAGCACCGCTTATTTGCGTAGAAGTTCATCTCAGTAA
TGGCCTGCCTGGCCTGACGCTGGTCGGCTTGCCCGAAACTACCGTTAAGGAGGCCAGAGACCGGGTACGCAGCGCGATCA
TCAATAGTGGTTATACCTTCCCGGCCAAAAAGATCACCATCAATCTGGCCCCAGCCGATCTCCCTAAGGAAGGGGGACGA
TACGATTTACCTATCGCCATCGCGCTTCTCGTCGCCTCTGAGCAGCTCTCCTCCTCCAGGATAAGCGCATATGAGTTTGT
GGGTGAGCTGGCGCTTACAGGCGCGTTAAGAGGGGTTCCTGGCGCGATATCTGGCGCTCTGGCGGCTATACGCGCCGGGA
GAGAGATTATCGTCGCCAGAGATAATGCTGCTGAAGTCAGCCTTATTGAAGAAAAAGGCTGCCTGGTTGCTGAACACCTC
CAGGAAGTATGCGCTTTTCTTGAGGGATGTCATGAGCTGGCCGCGCCCGTTGGGGAGCCGTTTGTTGCCGAACATAACGA
GTGTGACATCAGCGATATCATCGGCCAGGAACAGGGTAAGAGGGCGCTGGAGATCACCGCAGCTGGTGCGCATAACCTGC
TGCTCATTGGCCCACCCGGCACCGGCAAAACCATGCTCGCGAGCCGGCTCAACACTCTGCTGCCGCCACTCAGTAACCAT
GAGGCGCTGGAAAGCGCGGCTATCGTAAGCCTGGTCAGCGCCACATCAATGTATAAACAATGGCGTCAGCGCCCTTTCCG
GGCCCCGCATCATAGTGCCTCGCTGGTAGCCATGGTGGGTGGAGGTGCAATCCCCGCGCCGGGAGAGATCTCACTGGCAC
ATAATGGCATTCTGTTTCTGGACGAATTGCCCGAGTTTGAGCGTCGCGTGCTGGACGCCTTACGCGAGCCCATTGAATCC
GGGCAAATTAATATCTACCGCACGCGCGCAAAGATCAGTTATCCGGCACGCTTCCAGCTTATCGCCGCCATGAACCCCAG
CCCAACGGGGCACTATCAAGGCAATCATAATCGCTGCTCGCCCGAGCAGACGCTCCGCTATCTGGGTCGCTTGTCCGGGC
CATTCCTCGACCGCTTCGATCTATCGCTCGAGATCCCACTCCCGCCGCCAGGCTTACTAAGCCAGGCGCATAAAACGGGG
GAATCAAGCCTCACCGTGCGAAACCGAGTGATTGCCGCACAGGAGAGGCAGCTGGCAAGGCAGAAGAAACGTAACGCGCA
TCTGGATAACGCTGAGATCCGCACTTTTTGCCGGCTAGCGGCAGATGACGCGCTGTGGCTGGAGGAGACACTTACCCATT
TTGGTCTGTCAGTACGTGCGTGGCAGCGGTTGTTAAAAGTTGCCCGTACTATTGCCGATCTGGAGGAGTGTGAAAATATT
GAACGCAGGCATCTACAGGAAGCGCTGAGCTATCGCGCTATTGACCGCCTGCTGCTACACCTGCAAAAGATGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.491

100

0.601
  comM Glaesserella parasuis strain SC1401

59.332

100

0.597
  comM Vibrio campbellii strain DS40M4

57.937

99.605

0.577
  comM Vibrio cholerae strain A1552

58.167

99.209

0.577
  comM Legionella pneumophila str. Paris

49.497

98.221

0.486
  comM Legionella pneumophila strain ERS1305867

49.497

98.221

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443

Multiple sequence alignment