Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HXS80_RS06925 Genome accession   NZ_CP058556
Coordinates   1634857..1635927 (-) Length   356 a.a.
NCBI ID   WP_179181096.1    Uniprot ID   -
Organism   Streptomyces sp. CB04723     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1629857..1640927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS80_RS06910 (HXS80_06910) - 1629905..1630963 (-) 1059 WP_179181095.1 VWA domain-containing protein -
  HXS80_RS06915 (HXS80_06915) - 1631119..1633383 (-) 2265 WP_179184276.1 M9 family metallopeptidase -
  HXS80_RS06920 (HXS80_06920) - 1633730..1634860 (-) 1131 WP_256985808.1 ABC transporter ATP-binding protein -
  HXS80_RS06925 (HXS80_06925) amiE 1634857..1635927 (-) 1071 WP_179181096.1 ABC transporter ATP-binding protein Regulator
  HXS80_RS06930 (HXS80_06930) - 1635931..1636917 (-) 987 WP_031053884.1 ABC transporter permease -
  HXS80_RS06935 (HXS80_06935) - 1636914..1637885 (-) 972 WP_179181097.1 ABC transporter permease -
  HXS80_RS06940 (HXS80_06940) - 1637906..1639651 (-) 1746 WP_179181098.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37608.96 Da        Isoelectric Point: 7.5132

>NTDB_id=405491 HXS80_RS06925 WP_179181096.1 1634857..1635927(-) (amiE) [Streptomyces sp. CB04723]
MPHTTAPDRPLLRVRDLRVAFDTPAGAVQAVDGVSFTVEAGRTLGLVGESGSGKSVTSLAVLGLHRRARVSGSIALAGEE
LVGLGDRRFGRLRGRRMAMVFQDPLSALHPAYTVGEQIAEAHRHHFGSGRRAARRRAVEMLGEVGIPEPARRAGEYPHQF
SGGMRQRAMIAMALSCEPELLVADEPTTALDVTVQAQILDLIVRLQEERGLGVLMITHDLGVVARVAHDVLVMYGGRGAE
QAPVDALFEEPAHPYTRGLLDSLPRLDDPDDAPLRAIPGSPPSPAEPRGGCPFEPRCPRAAAATAPERARCAAETPRSTG
LPGGRSIACHLPLTAAPPAPRPGPSGGAPVPAEEAR

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=405491 HXS80_RS06925 WP_179181096.1 1634857..1635927(-) (amiE) [Streptomyces sp. CB04723]
GTGCCGCACACCACCGCACCGGACCGCCCGCTGCTGCGCGTCCGCGACCTGCGGGTCGCCTTCGACACCCCGGCGGGAGC
CGTCCAGGCCGTCGACGGGGTCTCGTTCACCGTGGAGGCCGGCCGCACCCTGGGGCTGGTCGGGGAGTCCGGCTCCGGCA
AGTCGGTCACCTCCCTCGCCGTGCTGGGCCTGCACCGCCGGGCCCGGGTGAGCGGATCGATCGCCCTTGCCGGGGAGGAG
CTGGTCGGCCTGGGCGACCGGCGGTTCGGCCGGCTGCGGGGCCGCCGGATGGCCATGGTCTTCCAGGACCCGCTGTCCGC
GCTGCACCCCGCGTACACGGTCGGCGAACAGATCGCGGAGGCCCACCGCCACCACTTCGGCAGCGGTCGGCGCGCCGCCC
GCCGACGCGCCGTGGAGATGCTCGGCGAGGTCGGCATCCCCGAACCGGCCCGCCGGGCGGGGGAGTACCCGCACCAGTTC
TCCGGCGGGATGCGCCAGCGCGCGATGATCGCCATGGCCCTGTCCTGCGAACCGGAACTGCTCGTCGCGGACGAGCCGAC
GACCGCGCTCGACGTCACCGTCCAGGCGCAGATCCTGGACCTGATCGTCCGCCTCCAGGAGGAACGCGGACTGGGCGTCC
TGATGATCACCCACGACCTCGGCGTGGTGGCGCGCGTCGCCCACGACGTGCTCGTCATGTACGGCGGACGCGGCGCCGAA
CAGGCCCCGGTGGACGCGCTGTTCGAGGAGCCGGCCCATCCCTACACCCGGGGGCTGCTGGACTCGCTGCCCCGGCTGGA
CGATCCCGACGACGCCCCGCTGCGGGCCATCCCCGGCAGTCCGCCGTCCCCGGCCGAGCCGCGCGGCGGCTGCCCCTTCG
AGCCGCGCTGTCCCCGGGCGGCCGCCGCCACCGCCCCGGAGCGGGCCCGCTGCGCCGCCGAGACGCCCCGCTCCACGGGC
CTGCCCGGCGGGCGGTCGATCGCCTGCCATCTGCCCCTGACGGCCGCCCCGCCCGCCCCGCGCCCCGGTCCGTCCGGCGG
GGCGCCCGTACCGGCCGAGGAGGCCCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(32-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(240-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.753

86.517

0.404
  amiE Streptococcus thermophilus LMG 18311

46.429

86.517

0.402
  amiE Streptococcus thermophilus LMD-9

46.429

86.517

0.402
  oppD Streptococcus mutans UA159

47.423

81.742

0.388