Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   EML4_RS05130 Genome accession   NZ_CP058525
Coordinates   1041793..1042515 (-) Length   240 a.a.
NCBI ID   WP_060724145.1    Uniprot ID   A0A822UWS7
Organism   Agrobacterium tumefaciens strain EML4     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1036793..1047515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EML4_RS05120 (EML4_05120) - 1038287..1040695 (+) 2409 WP_121592417.1 ComEC/Rec2 family competence protein -
  EML4_RS05125 (EML4_05125) - 1040715..1041392 (-) 678 WP_003502589.1 glutathione S-transferase family protein -
  EML4_RS05130 (EML4_05130) dinR/lexA 1041793..1042515 (-) 723 WP_060724145.1 transcriptional repressor LexA Regulator
  EML4_RS05135 (EML4_05135) - 1042727..1043608 (+) 882 WP_121592224.1 VOC family protein -
  EML4_RS05140 (EML4_05140) kdsA 1043608..1044453 (+) 846 WP_060724147.1 3-deoxy-8-phosphooctulonate synthase -
  EML4_RS05145 (EML4_05145) eno 1044601..1045875 (+) 1275 WP_003512870.1 phosphopyruvate hydratase -
  EML4_RS05150 (EML4_05150) - 1046180..1046497 (+) 318 WP_003502598.1 septum formation initiator family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25944.88 Da        Isoelectric Point: 9.3311

>NTDB_id=405463 EML4_RS05130 WP_060724145.1 1041793..1042515(-) (dinR/lexA) [Agrobacterium tumefaciens strain EML4]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYTPGARPQ
RGFSPSVIEGSLGKAKAPEAAPAPKTPANDLVGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGSGEHYALEVKGDS
MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=405463 EML4_RS05130 WP_060724145.1 1041793..1042515(-) (dinR/lexA) [Agrobacterium tumefaciens strain EML4]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAACGAATGAAAGAGTCCGGCGTGCCGCCATCCTTCGA
TGAAATGAAGGACGCACTCGATCTTGCCTCGAAATCTGGCATCCACCGCCTGATCACCGCCCTCGAAGAGCGCGGGTTTA
TTCGCCGGCTACCAAATAGAGCGCGAGCGCTGGAAGTCATCAAGCTGCCTGAGGCCTATACGCCGGGTGCAAGGCCGCAG
CGCGGCTTTTCGCCGAGCGTCATCGAAGGCAGCCTTGGCAAGGCCAAGGCGCCGGAAGCGGCCCCTGCCCCCAAGACGCC
GGCCAATGATCTCGTCGGGGCCGTCACCGTGCCGGTCATGGGCCGCATTGCCGCCGGTGTGCCGATTTCCGCCATCCAGA
ACAATACCCACGATGTGGCCGTGCCTGTTGATATGCTCGGTTCGGGCGAACATTACGCTCTTGAGGTCAAGGGCGACTCG
ATGATCGAGGCCGGCATTTTTGATGGCGATACCGTCATCATCCGCAATGGCAATACGGCGAATCCGGGTGATATCGTCGT
AGCGCTGGTGGATGATGAGGAAGCCACCCTGAAGCGTTTCCGTCGCAAGGGCGCCTCCATTGCGCTCGAGGCGGCAAACC
CAGCCTATGAAACGCGTATTTTTGGACCGGACCGGGTGAAAATCCAGGGCAAGCTGGTAGGGCTGATCCGCCGTTACCAT
TGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(2-63)

Peptidase S24-like (Peptidase_S24)

(118-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822UWS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363

Multiple sequence alignment