Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   EML4_RS00805 Genome accession   NZ_CP058525
Coordinates   167647..168012 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens strain EML4     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 162647..173012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EML4_RS00790 (EML4_00790) - 164860..165237 (-) 378 WP_003503485.1 hypothetical protein -
  EML4_RS00795 (EML4_00795) - 165756..167351 (+) 1596 WP_233282984.1 globin-coupled sensor protein -
  EML4_RS00800 (EML4_00800) - 167351..167650 (+) 300 WP_003503483.1 STAS domain-containing protein -
  EML4_RS00805 (EML4_00805) scnR 167647..168012 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  EML4_RS00810 (EML4_00810) - 168029..170290 (+) 2262 WP_003503479.1 chemotaxis protein CheA -
  EML4_RS00815 (EML4_00815) cheR 170304..171212 (+) 909 WP_003503478.1 protein-glutamate O-methyltransferase CheR -
  EML4_RS00820 (EML4_00820) cheB 171209..172264 (+) 1056 WP_003522763.1 protein-glutamate O-methylesterase CheB -
  EML4_RS00825 (EML4_00825) cheY2 172264..172653 (+) 390 WP_003503467.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=405453 EML4_RS00805 WP_003493773.1 167647..168012(+) (scnR) [Agrobacterium tumefaciens strain EML4]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=405453 EML4_RS00805 WP_003493773.1 167647..168012(+) (scnR) [Agrobacterium tumefaciens strain EML4]
GTGAAGAAAAAAGTTCTTACCGTGGATGATTCCCGGACGATCAGGAACATGCTCCTGGTCACGCTTAACAATGCCGGTTT
CGAAACCATTCAGGCCGAAGACGGCATCGAGGGCCTCGAAGTGCTCGAGCAGAGCAACCCCGATGTCATCGTGACTGATA
TCAACATGCCCCGTCTCGATGGTTTCGGCTTCATCGAGGGTGTGCGTCGCAACGAAAAGTACCGGGCGATCCCGATCCTC
GTTCTGACGACCGAAAGCGATGCAGAAAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACCGGCTGGATCGTCAAGCCGTT
CGACCCTGCAAAACTCATCGATGCCATTGAACGCGTAACCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364

Multiple sequence alignment