Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   GOQ05_RS17290 Genome accession   NZ_CP046552
Coordinates   3593474..3594292 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 19WIARLN021_full     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3588474..3599292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOQ05_RS17275 (GOQ05_17140) pilE 3588693..3589118 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  GOQ05_RS17280 (GOQ05_17145) pilY2 3589115..3589597 (-) 483 WP_163063059.1 type IV pilin protein Machinery gene
  GOQ05_RS17285 (GOQ05_17150) pilY1 3589608..3593462 (-) 3855 WP_216074186.1 PilC/PilY family type IV pilus protein Machinery gene
  GOQ05_RS17290 (GOQ05_17155) pilX 3593474..3594292 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GOQ05_RS17295 (GOQ05_17160) pilW 3594289..3595290 (-) 1002 WP_163063057.1 PilW family protein Machinery gene
  GOQ05_RS17300 (GOQ05_17165) pilV 3595291..3595851 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  GOQ05_RS17305 (GOQ05_17170) fimU 3595845..3596318 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GOQ05_RS17310 (GOQ05_17175) ispH 3596488..3597438 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GOQ05_RS17315 (GOQ05_17180) gmk 3597561..3598190 (+) 630 WP_000015937.1 guanylate kinase -
  GOQ05_RS17320 (GOQ05_17185) rpoZ 3598263..3598541 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  GOQ05_RS17325 (GOQ05_17190) - 3598580..3598709 (+) 130 Protein_3381 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=405422 GOQ05_RS17290 WP_000149374.1 3593474..3594292(-) (pilX) [Acinetobacter baumannii strain 19WIARLN021_full]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=405422 GOQ05_RS17290 WP_000149374.1 3593474..3594292(-) (pilX) [Acinetobacter baumannii strain 19WIARLN021_full]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment